Prupe.5G070500_v2.0.a1

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0029067
Physical Location & Seq
Reverse (-)
8474980 .. 8476076
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G070500.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 669 bp
ATGCCATTAAGATATGAGATATTGGCAGGGGCTTCTCTGCAAGCTATTACCACTCATGGGCAACCGTATGACTACCTACAATATGTACTACAATGGCAGAAGACGAAATGCTTGAAGGTCGGGAAACGGTGCACTCCATATGAGAAGTTCACTACTCACGGCCTCTGGCCAACCAACCTCTCCAAGATATTGACATGCAAATCAGCTTCAAAATTTAGCAGCACTATGCTGCAAAATAATGCTTCATTGCTATCGAAGATGAAAAAGTCCTGGCCAAATCTGGAGCAGAGAGTTGCCCAAGGAAAAGACAACGATATGTGGTTTTGGGCGATGGAGTACGAAAAACACGGTATATGTGCCAAGTTTTCTAGCCAGAATACTTACTTGTCAAAAGCATGTGATTTGTGGGAAGAAAACAAGATTAAGGAGATTTTTGAGCACCACAAAATCTTTCCAACAAACGCGACGTCATATAAAGATGTTTTGCTTATGAATGCTATTGAAATGGAAACTCGCAGTTCTCCTCTCCTTCTTTGCCATAGAGTCAACGGCGATTATTTGTTGTGGGAGGTTGTTCTTTGCTATGACGACACGGCTAAAAAACGGATGAATTGTTCTGATCAAAGTGCAAGACAAACAAATTGCGGAACGGACATCTATTATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

223

Amino Acids

25.83

Weight (kDa)

8.85

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029067)

Species Orthologous Gene IDs
prunus_persica Prupe.5G070500_v2.0.a1 Prupe.5G070500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AatII GACGTC 1 cut(s) 470
AccII CGCG 1 cut(s) 464
AciI CCGC 1 cut(s) 645
AcoI YGGCCR 2 cut(s) 167, 272
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 2 cut(s) 87, 338
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 3 cut(s) 115, 210, 503
AjnI CCWGG 1 cut(s) 269
AloI GAACNNNNNNTCC 2 cut(s) 598, 630
AluBI AGCT 2 cut(s) 44, 206
AluI AGCT 2 cut(s) 44, 206
Alw21I GWGCWC 2 cut(s) 134, 441
Alw44I GTGCAC 1 cut(s) 130
AoxI GGCC 3 cut(s) 160, 167, 272
ApaLI GTGCAC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 219, 229
ApoI RAATTY 1 cut(s) 212
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
BaeGI GKGCMC 1 cut(s) 134
BalI TGGCCA 2 cut(s) 169, 274
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 134, 441
BbvI GCAGC 2 cut(s) 216, 231
BccI CCATC 1 cut(s) 325
BceAI ACGGC 3 cut(s) 175, 565, 609
BciT130I CCWGG 1 cut(s) 271
BclI TGATCA 1 cut(s) 619
BfaI CTAG 1 cut(s) 369
BisI GCNGC 2 cut(s) 220, 230
BlsI GCNGC 2 cut(s) 221, 231
Bme1390I CCNGG 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 513
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 2 cut(s) 216, 231
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 3 cut(s) 162, 169, 274
BsiHKAI GWGCWC 2 cut(s) 134, 441
BslI CCNNNNNNNGG 1 cut(s) 57
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 3 cut(s) 162, 169, 274
Bsp1286I GDGCHC 2 cut(s) 134, 441
Bsp143I GATC 1 cut(s) 619
BspACI CCGC 1 cut(s) 645
BspANI GGCC 3 cut(s) 162, 169, 274
BspFNI CGCG 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 619
BssNI GRCGYC 1 cut(s) 467
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 3 cut(s) 66, 129, 350
BstACI GRCGYC 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 1 cut(s) 464
BstKTI GATC 1 cut(s) 622
BstMBI GATC 1 cut(s) 619
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 2 cut(s) 198, 399
BstSCI CCNGG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 134
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 216, 231
BstV2I GAAGAC 1 cut(s) 107
BsuRI GGCC 3 cut(s) 162, 169, 274
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 86, 337
CviAII CATG 3 cut(s) 56, 195, 396
CviJI RGCY 8 cut(s) 32, 44, 162, 169, 206, 274, 372, 596
CviKI_1 RGCY 8 cut(s) 32, 44, 162, 169, 206, 274, 372, 596
CviQI GTAC 2 cut(s) 86, 337
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
EaeI YGGCCR 2 cut(s) 167, 272
Eco130I CCWWGG 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 59, 198, 399
FatI CATG 3 cut(s) 55, 194, 395
FauNDI CATATG 1 cut(s) 139
FbaI TGATCA 1 cut(s) 619
Fnu4HI GCNGC 2 cut(s) 220, 230
FokI GGATG 1 cut(s) 619
Fsp4HI GCNGC 2 cut(s) 220, 230
FspBI CTAG 1 cut(s) 369
GluI GCNGC 2 cut(s) 220, 230
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 3 cut(s) 162, 169, 274
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 3 cut(s) 59, 198, 399
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 1 cut(s) 543
Hpy166II GTNNAC 3 cut(s) 132, 150, 547
Hpy188I TCNGA 1 cut(s) 619
Hpy188III TCNNGA 2 cut(s) 121, 281
Hpy8I GTNNAC 3 cut(s) 132, 150, 547
Hpy99I CGWCG 1 cut(s) 469
HpyAV CCTTC 2 cut(s) 109, 539
HpyCH4III ACNGT 3 cut(s) 66, 129, 350
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 5 cut(s) 40, 132, 198, 232, 629
HpySE526I ACGT 1 cut(s) 467
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 3 cut(s) 59, 198, 399
Ksp22I TGATCA 1 cut(s) 619
Kzo9I GATC 1 cut(s) 619
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 6 cut(s) 12, 151, 256, 266, 283, 386
Lsp1109I GCAGC 2 cut(s) 216, 231
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 467
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MboII GAAGA 3 cut(s) 112, 268, 422
MhlI GDGCHC 2 cut(s) 134, 441
MlsI TGGCCA 2 cut(s) 169, 274
MluCI AATT 3 cut(s) 212, 610, 640
MluNI TGGCCA 2 cut(s) 169, 274
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 4 cut(s) 173, 188, 534, 562
Mox20I TGGCCA 2 cut(s) 169, 274
MscI TGGCCA 2 cut(s) 169, 274
MseI TTAA 2 cut(s) 8, 423
Msp20I TGGCCA 2 cut(s) 169, 274
MspR9I CCNGG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 499
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 464
NdeI CATATG 1 cut(s) 139
NdeII GATC 1 cut(s) 619
NlaIII CATG 3 cut(s) 59, 198, 399
NspI RCATGY 2 cut(s) 198, 399
PctI GAATGC 1 cut(s) 499
PkrI GCNGC 2 cut(s) 221, 231
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
RsaI GTAC 2 cut(s) 87, 338
RsaNI GTAC 2 cut(s) 86, 337
SaqAI TTAA 2 cut(s) 8, 423
SatI GCNGC 2 cut(s) 220, 230
Sau3AI GATC 1 cut(s) 619
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 2 cut(s) 134, 441
SetI ASST 7 cut(s) 46, 78, 120, 180, 208, 470, 573
Sse9I AATT 3 cut(s) 212, 610, 640
SsiI CCGC 1 cut(s) 645
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 66, 129, 350
TaiI ACGT 1 cut(s) 470
TaqI TCGA 1 cut(s) 254
TasI AATT 3 cut(s) 212, 610, 640
TatI WGTACW 1 cut(s) 85
Tru1I TTAA 2 cut(s) 8, 423
Tru9I TTAA 2 cut(s) 8, 423
TseI GCWGC 2 cut(s) 219, 229
TspDTI ATGAA 4 cut(s) 234, 275, 506, 623
TspGWI ACGGA 2 cut(s) 619, 665
VneI GTGCAC 1 cut(s) 130
XapI RAATTY 1 cut(s) 212
XceI RCATGY 2 cut(s) 198, 399
XspI CTAG 1 cut(s) 369
ZraI GACGTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.