Prupe.5G070900_v2.0.a1

Nup133 N terminal like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
8571822 .. 8572972
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G070900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 414 bp
ATGGCTTCAGATTTGGATGGTGGATGGGGGGTGCGGGTGGGTATGGCTAGTGTTTCCGATGTGGGATTCGTATATTCTTCAACATCTCTACGTCCTTTCCTGTCCTTTCCTTTGTCTAATTCTTCTCTTCTCTTCTCTTCTCCTTTCCTTTCCTTTCATTTCCTTTCCTTTCCTCTGTTTTATTTTAGCTTGAGCATTTATACTGGTGATTTGAGTGTTATATGGTTGTTTGCTTCATTGGCAGGTAAGGATGTTGATTCTGAGACCAAAGTGAAGAGCATTGAGGCTGATTTAAAGATTCTAAAGTTGCAGGAACGTGCCATGTCTCTTGCCCCTTCCTTCCACCCTTCATATTCCACGGTTGGCGGCAGTTCCGTGAAAATTTTCTTCCAGTCATTGCACTTGCGTGATTAG

Protein Analysis

138

Amino Acids

15.04

Weight (kDa)

6.26

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AciI CCGC 2 cut(s) 34, 366
AcsI RAATTY 1 cut(s) 381
AgsI TTSAA 1 cut(s) 81
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 257, 330
ApoI RAATTY 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 218
BccI CCATC 2 cut(s) 11, 18
BcoDI GTCTC 2 cut(s) 257, 330
BfaI CTAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 357
Bse1I ACTGG 2 cut(s) 208, 391
Bse3DI GCAATG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 3 cut(s) 22, 29, 256
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 208, 391
BsmAI GTCTC 2 cut(s) 257, 330
Bso31I GGTCTC 1 cut(s) 257
BspACI CCGC 2 cut(s) 34, 366
BspCNI CTCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 395
BsrI ACTGG 2 cut(s) 208, 391
BssECI CCNNGG 1 cut(s) 357
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 4 cut(s) 132, 137, 142, 269
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 22, 29, 256
BstMAI GTCTC 2 cut(s) 257, 330
BstMWI GCNNNNNNNGC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 22, 29, 256
BveI ACCTGC 1 cut(s) 233
CviAII CATG 1 cut(s) 322
CviJI RGCY 4 cut(s) 5, 47, 189, 287
CviKI_1 RGCY 4 cut(s) 5, 47, 189, 287
DdeI CTNAG 1 cut(s) 261
DraI TTTAAA 1 cut(s) 294
Eam1104I CTCTTC 4 cut(s) 132, 137, 142, 269
EarI CTCTTC 4 cut(s) 132, 137, 142, 269
Eco31I GGTCTC 1 cut(s) 257
FaeI CATG 1 cut(s) 325
FaiI YATR 7 cut(s) 44, 73, 201, 221, 223, 323, 352
FatI CATG 1 cut(s) 321
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 3 cut(s) 29, 36, 263
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 367
Hin1II CATG 1 cut(s) 325
HinfI GANTC 3 cut(s) 66, 257, 298
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 10, 58, 262
HpyAV CCTTC 3 cut(s) 345, 349, 357
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 2 cut(s) 91, 316
HpyCH4V TGCA 2 cut(s) 310, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 2 cut(s) 91, 316
Hsp92II CATG 1 cut(s) 325
LguI GCTCTTC 1 cut(s) 269
LpnPI CCDG 5 cut(s) 113, 189, 228, 296, 404
MaeI CTAG 1 cut(s) 48
MaeII ACGT 2 cut(s) 91, 316
MboII GAAGA 7 cut(s) 69, 114, 119, 124, 129, 286, 379
MluCI AATT 2 cut(s) 118, 381
MnlI CCTC 2 cut(s) 183, 277
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 1 cut(s) 325
OliI CACNNNNGTG 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 3 cut(s) 66, 257, 298
PkrI GCNGC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 1 cut(s) 367
SetI ASST 4 cut(s) 94, 191, 247, 319
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 2 cut(s) 118, 381
SsiI CCGC 2 cut(s) 34, 366
SspMI CTAG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 2 cut(s) 94, 319
TasI AATT 2 cut(s) 118, 381
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 3 cut(s) 66, 257, 298
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TspDTI ATGAA 3 cut(s) 146, 225, 339
TspGWI ACGGA 1 cut(s) 364
XapI RAATTY 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.