Prupe.5G081200_v2.0.a1

General transcription factor IIH subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
9461412 .. 9465661
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G081200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 357 bp
ATGCGGGATTTGGTACTAGCATTGCATAGTGCTGGTGGGGTAATCCTACGAGAGTTAGCTCTCAACTTCCTATCTCTGTTTGCGCGAAAGTGGCAGTCTCGTTTCACCCGACCACTTCTACTCCAAGCTTTCAGCCCCAAGCTAGACTCGCTCCTCCTCTCAGGTTCTCTCCCGCGTGGCGACATACCTATGGCGCAATTCATCATCAATTACAACAATACACTGCCCCCTTCACAGCAATTCATAATACATGTCTTGGATAGTACTCACCTGTTTGTGCAGCCCCATGCAGCTGAAATGATAAGAAGCGCCATTTCCGAATTTAGAGATCAGAATTCTTATGAGAAGCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.39

Weight (kDa)

9.39

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 85, 175
AciI CCGC 2 cut(s) 4, 173
AcsI RAATTY 2 cut(s) 320, 334
AfaI GTAC 2 cut(s) 15, 265
AflIII ACRYGT 1 cut(s) 250
AluBI AGCT 4 cut(s) 59, 128, 142, 293
AluI AGCT 4 cut(s) 59, 128, 142, 293
Alw26I GTCTC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 280, 290
ApoI RAATTY 2 cut(s) 320, 334
AspLEI GCGC 3 cut(s) 85, 196, 311
AsuHPI GGTGA 2 cut(s) 97, 260
BbvI GCAGC 2 cut(s) 292, 302
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 2 cut(s) 17, 143
BfoI RGCGCY 1 cut(s) 312
BisI GCNGC 2 cut(s) 281, 291
BlsI GCNGC 2 cut(s) 282, 292
BmcAI AGTACT 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse3DI GCAATG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 143, 146
BseXI GCAGC 2 cut(s) 292, 302
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 2 cut(s) 85, 175
BsmAI GTCTC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 2 cut(s) 4, 173
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 2 cut(s) 85, 175
BsrDI GCAATG 1 cut(s) 20
BssMI GATC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 160
BstFNI CGCG 2 cut(s) 85, 175
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 3 cut(s) 85, 196, 311
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 91, 148
BstNSI RCATGY 1 cut(s) 254
BstUI CGCG 2 cut(s) 85, 175
BstV1I GCAGC 2 cut(s) 292, 302
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 3 cut(s) 85, 196, 311
Csp6I GTAC 2 cut(s) 14, 264
CviAII CATG 2 cut(s) 251, 287
CviJI RGCY 7 cut(s) 59, 128, 135, 142, 283, 293, 349
CviKI_1 RGCY 7 cut(s) 59, 128, 135, 142, 283, 293, 349
CviQI GTAC 2 cut(s) 14, 264
DdeI CTNAG 1 cut(s) 160
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 334
FaeI CATG 2 cut(s) 254, 290
FaiI YATR 7 cut(s) 27, 185, 191, 245, 252, 288, 342
FatI CATG 2 cut(s) 250, 286
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 281, 291
Fsp4HI GCNGC 2 cut(s) 281, 291
FspBI CTAG 2 cut(s) 17, 143
GlaI GCGC 3 cut(s) 84, 195, 310
GluI GCNGC 2 cut(s) 281, 291
HaeII RGCGCY 1 cut(s) 312
HhaI GCGC 3 cut(s) 85, 196, 311
Hin1II CATG 2 cut(s) 254, 290
Hin6I GCGC 3 cut(s) 83, 194, 309
HinP1I GCGC 3 cut(s) 83, 194, 309
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 1 cut(s) 146
HphI GGTGA 2 cut(s) 97, 260
Hpy188I TCNGA 2 cut(s) 319, 333
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 25, 280, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 148
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 2 cut(s) 254, 290
HspAI GCGC 3 cut(s) 83, 194, 309
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 18, 147, 284
Lsp1109I GCAGC 2 cut(s) 292, 302
MaeI CTAG 2 cut(s) 17, 143
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MluCI AATT 5 cut(s) 197, 208, 239, 320, 334
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 2 cut(s) 164, 167
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 293
MvnI CGCG 2 cut(s) 85, 175
MwoI GCNNNNNNNGC 2 cut(s) 91, 148
NdeII GATC 1 cut(s) 328
NlaIII CATG 2 cut(s) 254, 290
NspI RCATGY 1 cut(s) 254
PciI ACATGT 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PkrI GCNGC 2 cut(s) 282, 292
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 2 cut(s) 15, 265
RsaNI GTAC 2 cut(s) 14, 264
RseI CAYNNNNRTG 1 cut(s) 188
SatI GCNGC 2 cut(s) 281, 291
Sau3AI GATC 1 cut(s) 328
ScaI AGTACT 1 cut(s) 265
SchI GAGTC 1 cut(s) 140
SetI ASST 7 cut(s) 61, 130, 144, 166, 190, 273, 295
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 5 cut(s) 197, 208, 239, 320, 334
SsiI CCGC 2 cut(s) 4, 173
SspMI CTAG 2 cut(s) 17, 143
TasI AATT 5 cut(s) 197, 208, 239, 320, 334
TatI WGTACW 1 cut(s) 263
TscAI CASTG 1 cut(s) 228
TseI GCWGC 2 cut(s) 280, 290
TspDTI ATGAA 2 cut(s) 190, 232
TspRI CASTG 1 cut(s) 228
XapI RAATTY 2 cut(s) 320, 334
XceI RCATGY 1 cut(s) 254
XspI CTAG 2 cut(s) 17, 143
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.