Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9603601 .. 9605818

Gene Structure 2218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G083000.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCCGAAAAATTACCTAAAAAATCCACCGGGTCCTTTTTTTGTCTTTTTCATATCCCCATAATTACCCAATGGCTAGTATTTAATCCAAAGAACCAAAAACATTTTCCTGGCACGTGTTTGAGCGCGGCTATACTATGTGACAACACCTACAACTTCACGGTAAAGTCACCGTCTGTCAGCTGGTACCTGAAAAAGGGCACTGGCGTCGACTCCGGCAGCAGCCGACTCAAACACGTGGTCGCTTCTGAGCTGTCTGTGAGGCACTTGTATGAGATCGCCAAAGTGAAGCAATCTGAGCCGTATTGCCAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005762 GO:0005829 GO:0005840 GO:0006412 GO:0006414 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0019866 GO:0022411 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032984 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070125 GO:0070126 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 ko03013 ko05416 map03010 map03013 map05416

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

106

Amino Acids

11.89

Weight (kDa)

9.39

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	128
AcvI	CACGTG	2 cut(s)	117, 238
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	188, 314
AfiI	CCNNNNNNNGG	1 cut(s)	196
AflIII	ACRYGT	2 cut(s)	116, 235
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	183, 253
AluI	AGCT	2 cut(s)	183, 253
ApeKI	GCWGC	2 cut(s)	219, 222
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	186
BbrPI	CACGTG	2 cut(s)	117, 238
BbvI	GCAGC	2 cut(s)	231, 234
BceAI	ACGGC	1 cut(s)	286
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	2 cut(s)	77, 316
BisI	GCNGC	3 cut(s)	129, 220, 223
BlsI	GCNGC	3 cut(s)	130, 221, 224
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	31, 111
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	34, 188
BmrFI	CCNGG	2 cut(s)	31, 111
BpuMI	CCSGG	1 cut(s)	31
BsaAI	YACGTR	2 cut(s)	117, 238
BsaHI	GRCGYC	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	208, 310
BseBI	CCWGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	240, 288
BseNI	ACTGG	2 cut(s)	208, 310
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	231, 234
Bsh1236I	CGCG	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	30, 216
BslI	CCNNNNNNNGG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	241, 289
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	34, 188
BspT107I	GGYRCC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	208, 310
BssMI	GATC	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	163, 174
BstACI	GRCGYC	1 cut(s)	207
BstBAI	YACGTR	2 cut(s)	117, 238
BstDEI	CTNAG	2 cut(s)	249, 297
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	29, 109
BstSLI	GKGCMC	1 cut(s)	203
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	231, 234
BtsIMutI	CAGTG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	187, 313
CviJI	RGCY	6 cut(s)	76, 131, 183, 225, 253, 301
CviKI_1	RGCY	6 cut(s)	76, 131, 183, 225, 253, 301
CviQI	GTAC	2 cut(s)	187, 313
DdeI	CTNAG	2 cut(s)	249, 297
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	33
Eco72I	CACGTG	2 cut(s)	117, 238
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	109
FaiI	YATR	5 cut(s)	54, 62, 134, 139, 273
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	129, 220, 223
Fsp4HI	GCNGC	3 cut(s)	129, 220, 223
FspBI	CTAG	2 cut(s)	77, 316
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	129, 220, 223
HapII	CCGG	2 cut(s)	30, 216
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	212, 228
HpaII	CCGG	2 cut(s)	30, 216
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	7, 250, 298
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	163, 174
HpyCH4IV	ACGT	2 cut(s)	116, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	2 cut(s)	249, 297
HpySE526I	ACGT	2 cut(s)	116, 237
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	1 cut(s)	126
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	7 cut(s)	43, 96, 123, 169, 189, 203, 229
Lsp1109I	GCAGC	2 cut(s)	231, 234
MaeI	CTAG	2 cut(s)	77, 316
MaeII	ACGT	2 cut(s)	116, 237
MaeIII	GTNAC	2 cut(s)	140, 168
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	11, 63
MlyI	GAGTC	2 cut(s)	206, 222
MnlI	CCTC	1 cut(s)	255
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	2 cut(s)	30, 216
MspR9I	CCNGG	2 cut(s)	31, 111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	276
NlaIV	GGNNCC	2 cut(s)	34, 188
NmuCI	GTSAC	2 cut(s)	140, 168
PkrI	GCNGC	3 cut(s)	130, 221, 224
PleI	GAGTC	2 cut(s)	206, 222
PmaCI	CACGTG	2 cut(s)	117, 238
PmlI	CACGTG	2 cut(s)	117, 238
PpsI	GAGTC	2 cut(s)	206, 222
Ppu21I	YACGTR	2 cut(s)	117, 238
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	109
PspCI	CACGTG	2 cut(s)	117, 238
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	34, 188
PspPI	GGNCC	1 cut(s)	33
PspPPI	RGGWCCY	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	183
RsaI	GTAC	2 cut(s)	188, 314
RsaNI	GTAC	2 cut(s)	187, 313
RseI	CAYNNNNRTG	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	129, 220, 223
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	33
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	206, 222
ScrFI	CCNGG	2 cut(s)	31, 111
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	7 cut(s)	19, 119, 152, 185, 192, 240, 255
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	2 cut(s)	11, 63
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	77, 316
StyD4I	CCNGG	2 cut(s)	29, 109
TaaI	ACNGT	2 cut(s)	163, 174
TaiI	ACGT	2 cut(s)	119, 240
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	11, 63
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	140, 168
TseI	GCWGC	2 cut(s)	219, 222
Tsp45I	GTSAC	2 cut(s)	140, 168
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	2 cut(s)	77, 316
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.