Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10365773 .. 10366503

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G093700.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGTATCCTCAGAAACCTCCTAGTCTTCTGCATCCTATGTGCCACTCTCTTCTTTGCATCAACCAATGCAGCTCATTTCGATATCCGAAACAACTGCCCCTTCACCGTCTGGGCAGCCGCCACGCCAGGCGGCGGACGCCAACTTAATAGAGGCGAAAATTGGGGCATAGACGTGGCTGCCGGAACCAAAGGGGGTCGCATTTGGGCCCGGACCGGATGTACCTTTGATGGAGCTGGACGTGGGAGATGCCAAACAGGTGATTGTGGGGGTATCCTTCAATGCCAAGCCTATGGCCAACCCCCAAACACCCTAGCTGAATATGCCCTTAACCAATTTAGCAACTTGGATTTCATTGACATTTCCCTTGTTGATGGCTTTAATGTTCCCATGGAATTTGGTTCCACGTCTAGTGGGTGCACTAGGGATATCAGATGTACGGCTGATATTAATGGGCAGTGTCCTGGCCAACTGAGGGCTCCAGGAGGCTGCAACAACCCTTGCACTGTGTTCAAGACTAATCAATATTGCTGCAATTCTGGGAGGTGTGAACCTACAGATTTATCTAGGTTTTTCAAGATGCGGTGCCCGGATGCTTATACACTACTACAAAAAAGCAAAAAGACGACGGTAAATCACCGTCGTGTATTTGGTTTTTCAATGGTCGTGGAATCCACCGTCATCTTTTCCCTCATAAACCACGACGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

238

Amino Acids

25.8

Weight (kDa)

8.61

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	585
AciI	CCGC	4 cut(s)	120, 132, 135, 583
AcoI	YGGCCR	2 cut(s)	295, 466
AcsI	RAATTY	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	2 cut(s)	223, 439
AfiI	CCNNNNNNNGG	2 cut(s)	134, 475
AgsI	TTSAA	4 cut(s)	281, 514, 577, 660
AjiI	CACGTC	3 cut(s)	175, 242, 408
AjnI	CCWGG	3 cut(s)	127, 463, 481
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	3 cut(s)	74, 236, 317
AluI	AGCT	3 cut(s)	74, 236, 317
Alw21I	GWGCWC	1 cut(s)	422
Alw44I	GTGCAC	1 cut(s)	418
AoxI	GGCC	3 cut(s)	207, 295, 466
ApaI	GGGCCC	1 cut(s)	211
ApaLI	GTGCAC	1 cut(s)	418
ApeKI	GCWGC	5 cut(s)	71, 116, 179, 489, 531
ApoI	RAATTY	1 cut(s)	395
AseI	ATTAAT	1 cut(s)	450
AspS9I	GGNCC	3 cut(s)	207, 208, 213
AsuC2I	CCSGG	2 cut(s)	211, 590
AsuHPI	GGTGA	3 cut(s)	97, 272, 629
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	3 cut(s)	211, 422, 590
BalI	TGGCCA	2 cut(s)	297, 468
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	211, 481
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	5 cut(s)	83, 128, 166, 476, 518
BccI	CCATC	2 cut(s)	224, 368
BceAI	ACGGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	3 cut(s)	129, 465, 483
BciVI	GTATCC	2 cut(s)	17, 284
BcnI	CCSGG	2 cut(s)	211, 590
BfaI	CTAG	5 cut(s)	23, 314, 411, 423, 567
BfmI	CTRYAG	1 cut(s)	555
BfuI	GTATCC	2 cut(s)	17, 284
BisI	GCNGC	7 cut(s)	72, 117, 120, 133, 180, 490, 532
BlsI	GCNGC	7 cut(s)	73, 118, 121, 134, 181, 491, 533
Bme1390I	CCNGG	5 cut(s)	129, 211, 465, 483, 590
Bme18I	GGWCC	1 cut(s)	213
BmgBI	CACGTC	3 cut(s)	175, 242, 408
BmgT120I	GGNCC	3 cut(s)	207, 208, 213
BmiI	GGNNCC	5 cut(s)	187, 209, 403, 480, 587
BmrFI	CCNGG	5 cut(s)	129, 211, 465, 483, 590
BmsI	GCATC	5 cut(s)	42, 68, 239, 570, 583
BpiI	GAAGAC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	465
BpuMI	CCSGG	2 cut(s)	211, 590
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 475
BseBI	CCWGG	3 cut(s)	129, 465, 483
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	3 cut(s)	33, 224, 598
BseLI	CCNNNNNNNGG	2 cut(s)	134, 475
BseMII	CTCAG	2 cut(s)	25, 464
BseSI	GKGCMC	3 cut(s)	211, 422, 590
BseXI	GCAGC	5 cut(s)	83, 128, 166, 476, 518
BshFI	GGCC	3 cut(s)	209, 297, 468
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	4 cut(s)	183, 211, 216, 590
BslI	CCNNNNNNNGG	2 cut(s)	134, 475
BsnI	GGCC	3 cut(s)	209, 297, 468
Bsp120I	GGGCCC	1 cut(s)	207
Bsp1286I	GDGCHC	4 cut(s)	211, 422, 481, 590
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	4 cut(s)	120, 132, 135, 583
BspANI	GGCC	3 cut(s)	209, 297, 468
BspCNI	CTCAG	2 cut(s)	24, 465
BspLI	GGNNCC	5 cut(s)	187, 209, 403, 480, 587
BspT107I	GGYRCC	1 cut(s)	585
BssECI	CCNNGG	1 cut(s)	390
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	129, 465, 483
Bst4CI	ACNGT	5 cut(s)	109, 508, 631, 641, 679
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	11, 473
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	33, 224, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 323
BstNI	CCWGG	3 cut(s)	129, 465, 483
BstSCI	CCNGG	5 cut(s)	127, 209, 463, 481, 588
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	3 cut(s)	211, 422, 590
BstV1I	GCAGC	5 cut(s)	83, 128, 166, 476, 518
BstV2I	GAAGAC	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	293
BsuI	GTATCC	2 cut(s)	17, 284
BsuRI	GGCC	3 cut(s)	209, 297, 468
BtgI	CCRYGG	1 cut(s)	390
BtrI	CACGTC	3 cut(s)	175, 242, 408
BtsCI	GGATG	3 cut(s)	33, 224, 598
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	464, 504
Cfr13I	GGNCC	3 cut(s)	207, 208, 213
CpoI	CGGWCCG	1 cut(s)	213
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	222, 438
CspCI	CAANNNNNGTGG	2 cut(s)	648, 683
CspI	CGGWCCG	1 cut(s)	213
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	2 cut(s)	222, 438
DdeI	CTNAG	2 cut(s)	11, 473
EaeI	YGGCCR	2 cut(s)	295, 466
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	2 cut(s)	211, 481
Eco32I	GATATC	2 cut(s)	85, 430
Eco47I	GGWCC	1 cut(s)	213
EcoRII	CCWGG	3 cut(s)	127, 463, 481
EcoRV	GATATC	2 cut(s)	85, 430
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	2 cut(s)	211, 481
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	1 cut(s)	394
FaiI	YATR	7 cut(s)	40, 170, 294, 324, 392, 600, 695
FatI	CATG	1 cut(s)	390
Fnu4HI	GCNGC	7 cut(s)	72, 117, 120, 133, 180, 490, 532
FokI	GGATG	3 cut(s)	20, 231, 605
FriOI	GRGCYC	2 cut(s)	211, 481
Fsp4HI	GCNGC	7 cut(s)	72, 117, 120, 133, 180, 490, 532
FspBI	CTAG	5 cut(s)	23, 314, 411, 423, 567
GluI	GCNGC	7 cut(s)	72, 117, 120, 133, 180, 490, 532
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	209, 297, 468
HapII	CCGG	4 cut(s)	183, 211, 216, 590
HgaI	GACGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	394
HinfI	GANTC	1 cut(s)	671
HpaII	CCGG	4 cut(s)	183, 211, 216, 590
HphI	GGTGA	3 cut(s)	97, 272, 629
Hpy166II	GTNNAC	2 cut(s)	420, 551
Hpy188I	TCNGA	3 cut(s)	14, 89, 434
Hpy188III	TCNNGA	2 cut(s)	514, 577
Hpy8I	GTNNAC	2 cut(s)	420, 551
Hpy99I	CGWCG	3 cut(s)	631, 645, 707
HpyAV	CCTTC	2 cut(s)	112, 287
HpyCH4III	ACNGT	5 cut(s)	109, 508, 631, 641, 679
HpyCH4IV	ACGT	3 cut(s)	174, 241, 407
HpyCH4V	TGCA	7 cut(s)	33, 59, 71, 420, 492, 504, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 323
HpyF3I	CTNAG	2 cut(s)	11, 473
HpySE526I	ACGT	3 cut(s)	174, 241, 407
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	233, 484
Lsp1109I	GCAGC	5 cut(s)	83, 128, 166, 476, 518
LweI	GCATC	5 cut(s)	42, 68, 239, 570, 583
MaeI	CTAG	5 cut(s)	23, 314, 411, 423, 567
MaeII	ACGT	3 cut(s)	174, 241, 407
MboII	GAAGA	2 cut(s)	19, 43
MhlI	GDGCHC	4 cut(s)	211, 422, 481, 590
MlsI	TGGCCA	2 cut(s)	297, 468
MluCI	AATT	4 cut(s)	160, 335, 395, 535
MluNI	TGGCCA	2 cut(s)	297, 468
MnlI	CCTC	7 cut(s)	20, 29, 146, 468, 479, 537, 701
Mox20I	TGGCCA	2 cut(s)	297, 468
MscI	TGGCCA	2 cut(s)	297, 468
MseI	TTAA	4 cut(s)	147, 330, 381, 450
MslI	CAYNNNNRTG	2 cut(s)	173, 642
Msp20I	TGGCCA	2 cut(s)	297, 468
MspI	CCGG	4 cut(s)	183, 211, 216, 590
MspR9I	CCNGG	5 cut(s)	129, 211, 465, 483, 590
MvaI	CCWGG	3 cut(s)	129, 465, 483
MwoI	GCNNNNNNNGC	2 cut(s)	138, 323
NciI	CCSGG	2 cut(s)	211, 590
NcoI	CCATGG	1 cut(s)	390
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	5 cut(s)	187, 209, 403, 480, 587
OliI	CACNNNNGTG	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	7 cut(s)	73, 118, 121, 134, 181, 491, 533
PshBI	ATTAAT	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	127, 463, 481
PspGI	CCWGG	3 cut(s)	127, 463, 481
PspN4I	GGNNCC	5 cut(s)	187, 209, 403, 480, 587
PspOMI	GGGCCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	207, 208, 213
RsaI	GTAC	2 cut(s)	223, 439
RsaNI	GTAC	2 cut(s)	222, 438
RseI	CAYNNNNRTG	2 cut(s)	173, 642
Rsr2I	CGGWCCG	1 cut(s)	213
RsrII	CGGWCCG	1 cut(s)	213
SaqAI	TTAA	4 cut(s)	147, 330, 381, 450
SatI	GCNGC	7 cut(s)	72, 117, 120, 133, 180, 490, 532
Sau96I	GGNCC	3 cut(s)	207, 208, 213
ScrFI	CCNGG	5 cut(s)	129, 211, 465, 483, 590
SduI	GDGCHC	4 cut(s)	211, 422, 481, 590
SfaNI	GCATC	5 cut(s)	42, 68, 239, 570, 583
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	173, 642
Sse9I	AATT	4 cut(s)	160, 335, 395, 535
SsiI	CCGC	4 cut(s)	120, 132, 135, 583
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	5 cut(s)	23, 314, 411, 423, 567
StyD4I	CCNGG	5 cut(s)	127, 209, 463, 481, 588
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	5 cut(s)	109, 508, 631, 641, 679
TaiI	ACGT	3 cut(s)	177, 244, 410
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	160, 335, 395, 535
TauI	GCSGC	2 cut(s)	122, 135
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	4 cut(s)	147, 330, 381, 450
Tru9I	TTAA	4 cut(s)	147, 330, 381, 450
TscAI	CASTG	2 cut(s)	464, 511
TseI	GCWGC	5 cut(s)	71, 116, 179, 489, 531
TspDTI	ATGAA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	464, 511
VneI	GTGCAC	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	213
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	1 cut(s)	395
XspI	CTAG	5 cut(s)	23, 314, 411, 423, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.