Prupe.5G093900_v2.0.a1

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
10380341 .. 10381529
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G093900.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 723 bp
ATGAATATAGCATCTTTACAATTCAATTCCAAAATGAGCCTGCTGCTCATCAGAAAAAACCTCTCATCAGTTTTCCCCATCCTATTGATCATCATCACCCTTTTCGTTGCAACCGTTCATGCAACACGTTTCGAAGTCCGAAACCAATGCCACTTCACCGTGTGGGCAGCCTCCAGACCCGGCGGTGGGAAGCAGCTTCTTCCAGGCCAAACTTGGTCCTTCGACGTGAACACGGGTACTTTCCCTGCCCAAATTTGGGGACGGACTGGGTGCAGCTTCAACGAAGCTGGACGCGGCAAATGTTTAACAGGTGATTGTGGAGGTCACCTCAAATGCCAAGATTTTGGTCAACCGCCATACACCATGGCTGAATATCACCCCCAACAATTTGACTTAGATTTTTTGGATATTTCTCTGGTTGATGGGTTTAATCTTCCTATGGAATTTAGTCCCACGGGTGGTGGTGATTGCAAGGGGATTCGATGCGCGGCTGATATAAACGGGGAGTGCCCTCTTGATTTGAGGGCACCCGGTGGGTGCAACAACCCCTGCAATGTCTTCAATACTGATCAATATTGTTGCAATTCCACCAGATGTGGCCCTACGAGCTACTCCAGGTTTTTTAAGGCTCGGTGCCCTGAGGCTTACACTTACCCTCTCGACAGTGACGCCACGTTTACATGCCCTGCTGGCACTAACTATATGGTTCTCTTCTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

241

Amino Acids

26.34

Weight (kDa)

6.39

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 526, 633
AccII CGCG 2 cut(s) 294, 488
AciI CCGC 4 cut(s) 183, 294, 353, 488
AcsI RAATTY 2 cut(s) 252, 443
AcyI GRCGYC 1 cut(s) 669
AdeI CACNNNGTG 2 cut(s) 162, 533
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 5 cut(s) 185, 186, 255, 256, 458
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 3 cut(s) 25, 280, 562
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 202, 614
AluBI AGCT 4 cut(s) 196, 276, 287, 609
AluI AGCT 4 cut(s) 196, 276, 287, 609
AoxI GGCC 2 cut(s) 205, 598
ApeKI GCWGC 4 cut(s) 43, 167, 193, 273
ApoI RAATTY 2 cut(s) 252, 443
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 2 cut(s) 216, 599
AsuC2I CCSGG 2 cut(s) 180, 531
AsuHPI GGTGA 6 cut(s) 88, 148, 317, 323, 368, 476
AsuII TTCGAA 1 cut(s) 132
AvaII GGWCC 1 cut(s) 216
AxyI CCTNAGG 1 cut(s) 639
BaeGI GKGCMC 3 cut(s) 512, 529, 638
BanI GGYRCC 2 cut(s) 526, 633
BbsI GAAGAC 1 cut(s) 550
BbvI GCAGC 4 cut(s) 30, 179, 205, 285
BccI CCATC 2 cut(s) 86, 416
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 2 cut(s) 204, 616
BclI TGATCA 2 cut(s) 87, 568
BcnI CCSGG 2 cut(s) 180, 531
BglI GCCNNNNNGGC 1 cut(s) 690
BisI GCNGC 6 cut(s) 44, 168, 194, 274, 295, 489
BlsI GCNGC 6 cut(s) 45, 169, 195, 275, 296, 490
Bme1390I CCNGG 4 cut(s) 180, 204, 531, 616
Bme18I GGWCC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 216, 599
BmiI GGNNCC 2 cut(s) 528, 635
BmrFI CCNGG 4 cut(s) 180, 204, 531, 616
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 20, 473
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 550
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpmI CTGGAG 2 cut(s) 157, 598
Bpu14I TTCGAA 1 cut(s) 132
BpuMI CCSGG 2 cut(s) 180, 531
BsaBI GATNNNNATC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 669
BsaJI CCNNGG 2 cut(s) 363, 453
Bsc4I CCNNNNNNNGG 5 cut(s) 185, 186, 255, 256, 458
Bse1I ACTGG 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 639
Bse3DI GCAATG 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 2 cut(s) 204, 616
BseDI CCNNGG 2 cut(s) 363, 453
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 5 cut(s) 185, 186, 255, 256, 458
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 1 cut(s) 271
BseSI GKGCMC 3 cut(s) 512, 529, 638
BseXI GCAGC 4 cut(s) 30, 179, 205, 285
BsgI GTGCAG 1 cut(s) 292
Bsh1236I CGCG 2 cut(s) 294, 488
BshFI GGCC 2 cut(s) 207, 600
BshNI GGYRCC 2 cut(s) 526, 633
BsiSI CCGG 2 cut(s) 180, 531
BslFI GGGAC 2 cut(s) 273, 435
BslI CCNNNNNNNGG 5 cut(s) 185, 186, 255, 256, 458
BsmFI GGGAC 2 cut(s) 273, 435
BsnI GGCC 2 cut(s) 207, 600
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 3 cut(s) 512, 529, 638
Bsp143I GATC 2 cut(s) 87, 568
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 4 cut(s) 183, 294, 353, 488
BspANI GGCC 2 cut(s) 207, 600
BspCNI CTCAG 1 cut(s) 631
BspFNI CGCG 2 cut(s) 294, 488
BspLI GGNNCC 2 cut(s) 528, 635
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 2 cut(s) 526, 633
BsrDI GCAATG 1 cut(s) 559
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 363, 453
BssMI GATC 2 cut(s) 87, 568
BssNI GRCGYC 1 cut(s) 669
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 204, 616
Bst4CI ACNGT 3 cut(s) 115, 160, 665
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 1 cut(s) 669
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 41, 691
BstDEI CTNAG 2 cut(s) 394, 639
BstDSI CCRYGG 2 cut(s) 363, 453
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 2 cut(s) 294, 488
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 2 cut(s) 90, 571
BstMBI GATC 2 cut(s) 87, 568
BstMWI GCNNNNNNNGC 2 cut(s) 606, 690
BstNI CCWGG 2 cut(s) 204, 616
BstNSI RCATGY 1 cut(s) 684
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 4 cut(s) 178, 202, 529, 614
BstSLI GKGCMC 3 cut(s) 512, 529, 638
BstUI CGCG 2 cut(s) 294, 488
BstV1I GCAGC 4 cut(s) 30, 179, 205, 285
BstV2I GAAGAC 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 344
Bsu36I CCTNAGG 1 cut(s) 639
BsuRI GGCC 2 cut(s) 207, 600
BtgI CCRYGG 2 cut(s) 363, 453
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 670
Cac8I GCNNGC 2 cut(s) 41, 691
CfoI GCGC 1 cut(s) 488
Cfr13I GGNCC 2 cut(s) 216, 599
CseI GACGC 2 cut(s) 300, 677
Csp6I GTAC 1 cut(s) 237
CviAII CATG 4 cut(s) 119, 364, 681, 720
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 394, 639
DpnI GATC 2 cut(s) 89, 570
DpnII GATC 2 cut(s) 87, 568
DraIII CACNNNGTG 2 cut(s) 162, 533
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 639
Eco91I GGTNACC 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 202, 614
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 4 cut(s) 122, 367, 684, 723
FaqI GGGAC 2 cut(s) 273, 435
FatI CATG 4 cut(s) 118, 363, 680, 719
FbaI TGATCA 2 cut(s) 87, 568
Fnu4HI GCNGC 6 cut(s) 44, 168, 194, 274, 295, 489
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 6 cut(s) 44, 168, 194, 274, 295, 489
GlaI GCGC 1 cut(s) 487
GluI GCNGC 6 cut(s) 44, 168, 194, 274, 295, 489
GsuI CTGGAG 2 cut(s) 157, 598
HaeIII GGCC 2 cut(s) 207, 600
HapII CCGG 2 cut(s) 180, 531
HgaI GACGC 2 cut(s) 300, 677
HhaI GCGC 1 cut(s) 488
Hin1I GRCGYC 1 cut(s) 669
Hin1II CATG 4 cut(s) 122, 367, 684, 723
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HincII GTYRAC 1 cut(s) 350
HindII GTYRAC 1 cut(s) 350
HinfI GANTC 1 cut(s) 478
HpaII CCGG 2 cut(s) 180, 531
HphI GGTGA 6 cut(s) 88, 148, 317, 323, 368, 476
Hpy166II GTNNAC 3 cut(s) 229, 350, 678
Hpy188I TCNGA 2 cut(s) 53, 140
Hpy188III TCNNGA 3 cut(s) 174, 515, 659
Hpy8I GTNNAC 3 cut(s) 229, 350, 678
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 3 cut(s) 115, 160, 665
HpyCH4IV ACGT 3 cut(s) 127, 225, 674
HpyCH4V TGCA 7 cut(s) 110, 122, 273, 471, 540, 552, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 606, 690
HpyF3I CTNAG 2 cut(s) 394, 639
HpySE526I ACGT 3 cut(s) 127, 225, 674
Hsp92I GRCGYC 1 cut(s) 669
Hsp92II CATG 4 cut(s) 122, 367, 684, 723
HspAI GCGC 1 cut(s) 486
Ksp22I TGATCA 2 cut(s) 87, 568
Kzo9I GATC 2 cut(s) 87, 568
Lsp1109I GCAGC 4 cut(s) 30, 179, 205, 285
LweI GCATC 2 cut(s) 20, 473
MaeII ACGT 3 cut(s) 127, 225, 674
MaeIII GTNAC 2 cut(s) 323, 665
MalI GATC 2 cut(s) 89, 570
MboI GATC 2 cut(s) 87, 568
MboII GAAGA 4 cut(s) 191, 425, 550, 703
MhlI GDGCHC 3 cut(s) 512, 529, 638
MluCI AATT 6 cut(s) 20, 25, 252, 386, 443, 583
MnlI CCTC 8 cut(s) 71, 181, 314, 338, 516, 522, 634, 666
MseI TTAA 3 cut(s) 305, 429, 624
MspI CCGG 2 cut(s) 180, 531
MspR9I CCNGG 4 cut(s) 180, 204, 531, 616
MvaI CCWGG 2 cut(s) 204, 616
MvnI CGCG 2 cut(s) 294, 488
MwoI GCNNNNNNNGC 2 cut(s) 606, 690
NciI CCSGG 2 cut(s) 180, 531
NcoI CCATGG 1 cut(s) 363
NdeII GATC 2 cut(s) 87, 568
NlaIII CATG 4 cut(s) 122, 367, 684, 723
NlaIV GGNNCC 2 cut(s) 528, 635
NmuCI GTSAC 2 cut(s) 323, 665
NspI RCATGY 1 cut(s) 684
NspV TTCGAA 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 6 cut(s) 45, 169, 195, 275, 296, 490
Psp6I CCWGG 2 cut(s) 202, 614
PspEI GGTNACC 1 cut(s) 323
PspGI CCWGG 2 cut(s) 202, 614
PspN4I GGNNCC 2 cut(s) 528, 635
PspPI GGNCC 2 cut(s) 216, 599
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 305, 429, 624
SatI GCNGC 6 cut(s) 44, 168, 194, 274, 295, 489
Sau3AI GATC 2 cut(s) 87, 568
Sau96I GGNCC 2 cut(s) 216, 599
ScrFI CCNGG 4 cut(s) 180, 204, 531, 616
SduI GDGCHC 3 cut(s) 512, 529, 638
SfaNI GCATC 2 cut(s) 20, 473
SfuI TTCGAA 1 cut(s) 132
SinI GGWCC 1 cut(s) 216
Sse9I AATT 6 cut(s) 20, 25, 252, 386, 443, 583
SsiI CCGC 4 cut(s) 183, 294, 353, 488
SspI AATATT 1 cut(s) 575
StyD4I CCNGG 4 cut(s) 178, 202, 529, 614
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 3 cut(s) 115, 160, 665
TaiI ACGT 3 cut(s) 130, 228, 677
TaqI TCGA 4 cut(s) 132, 222, 481, 660
TasI AATT 6 cut(s) 20, 25, 252, 386, 443, 583
TauI GCSGC 2 cut(s) 297, 491
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 3 cut(s) 305, 429, 624
Tru9I TTAA 3 cut(s) 305, 429, 624
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 2 cut(s) 323, 665
TseI GCWGC 4 cut(s) 43, 167, 193, 273
Tsp45I GTSAC 2 cut(s) 323, 665
TspDTI ATGAA 2 cut(s) 17, 107
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 2 cut(s) 252, 443
XceI RCATGY 1 cut(s) 684
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.