Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10383472 .. 10388091

Gene Structure 4620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G094000.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGCATCCTCAAGACTCTCCCAGCCTTCTGCATCCTATGTGCCACTCTCTTCTTTGCATCAACCAACGCAGCTCGATTCAATATCCGAAACAACTGCCCCTTCACAGTCTGGGCAGCAGCCACGCCAGGCGGCGGACTCCAACTTAATAGAGGCCAAACTGAGTATGCCCTTAACCAGTACAACAACTTGGATTTCTTTGACATTTCCCTTGTTGATGGCTTCAACGTCCCTATGGACTTTAGCCCCACGTCTAATGGGTGCACCAAGGGCATCAGACGACTGATAAATATTGCTGCAATTCTGGGAGCTGTGGCCCAACAGACTTGTCTAGGTTTTTTAAGGATCGGTGCCCGAGTGCTTATAGCTACCCGATACATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

129

Amino Acids

13.98

Weight (kDa)

9.26

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	2 cut(s)	132, 135
AclWI	GGATC	1 cut(s)	353
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	82, 226
AjiI	CACGTC	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	74, 311, 368
AluI	AGCT	3 cut(s)	74, 311, 368
Alw21I	GWGCWC	1 cut(s)	266
Alw44I	GTGCAC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	2 cut(s)	154, 315
ApaLI	GTGCAC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	71, 116, 119, 296
AspS9I	GGNCC	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	354
BaeGI	GKGCMC	2 cut(s)	266, 355
BanI	GGYRCC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	83, 128, 131, 283
BccI	CCATC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	1 cut(s)	129
BfaI	CTAG	2 cut(s)	332, 385
BisI	GCNGC	5 cut(s)	72, 117, 120, 133, 297
BlsI	GCNGC	5 cut(s)	73, 118, 121, 134, 298
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	354
BmgBI	CACGTC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	4 cut(s)	15, 42, 68, 282
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	6, 33
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	178
BseSI	GKGCMC	2 cut(s)	266, 355
BseXI	GCAGC	4 cut(s)	83, 128, 131, 283
BseYI	CCCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	156, 317
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	156, 317
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	266, 355
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	2 cut(s)	132, 135
BspANI	GGCC	2 cut(s)	156, 317
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	6, 33
BstKTI	GATC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSLI	GKGCMC	2 cut(s)	266, 355
BstV1I	GCAGC	4 cut(s)	83, 128, 131, 283
BsuRI	GGCC	2 cut(s)	156, 317
BtrI	CACGTC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	6, 33
Cfr13I	GGNCC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	181
CviJI	RGCY	9 cut(s)	26, 74, 122, 156, 222, 246, 311, 317, 368
CviKI_1	RGCY	9 cut(s)	26, 74, 122, 156, 222, 246, 311, 317, 368
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaiI	YATR	4 cut(s)	40, 168, 236, 365
FaqI	GGGAC	1 cut(s)	215
Fnu4HI	GCNGC	5 cut(s)	72, 117, 120, 133, 297
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	72, 117, 120, 133, 297
FspBI	CTAG	2 cut(s)	332, 385
GluI	GCNGC	5 cut(s)	72, 117, 120, 133, 297
GsaI	CCCAGC	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	156, 317
HinfI	GANTC	3 cut(s)	16, 78, 138
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	89, 278
Hpy188III	TCNNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	37, 112
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	228, 251
HpyCH4V	TGCA	4 cut(s)	33, 59, 264, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	228, 251
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	6 cut(s)	36, 97, 114, 141, 191, 290
Lsp1109I	GCAGC	4 cut(s)	83, 128, 131, 283
LweI	GCATC	4 cut(s)	15, 42, 68, 282
MaeI	CTAG	2 cut(s)	332, 385
MaeII	ACGT	2 cut(s)	228, 251
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	2 cut(s)	43, 373
MhlI	GDGCHC	2 cut(s)	266, 355
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	10, 132
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	2 cut(s)	20, 146
MseI	TTAA	3 cut(s)	147, 174, 341
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	5 cut(s)	73, 118, 121, 134, 298
PleI	GAGTC	2 cut(s)	10, 132
PpsI	GAGTC	2 cut(s)	10, 132
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	316
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	3 cut(s)	147, 174, 341
SatI	GCNGC	5 cut(s)	72, 117, 120, 133, 297
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	316
SchI	GAGTC	2 cut(s)	10, 132
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	2 cut(s)	266, 355
SetI	ASST	6 cut(s)	76, 231, 254, 313, 337, 370
SfaNI	GCATC	4 cut(s)	15, 42, 68, 282
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	2 cut(s)	132, 135
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	332, 385
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	231, 254
TaqI	TCGA	1 cut(s)	76
TasI	AATT	1 cut(s)	300
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	3 cut(s)	147, 174, 341
Tru9I	TTAA	3 cut(s)	147, 174, 341
TseI	GCWGC	4 cut(s)	71, 116, 119, 296
VneI	GTGCAC	1 cut(s)	262
XspI	CTAG	2 cut(s)	332, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.