Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10443430 .. 10444432

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G094400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGCCTACTAAAAAACTTCTCAGTTTTTTCCATCATATGCATCACCCTTTGTTTTCCAATATCAACCAATGCAGCGCATTTTGATATCCGAAACAACTGTGGCTTCAAAGTCTGGGCAGCAGCCGTACCAGGCGGTGGAAGGCAGCTTAACAGTGGCGAATCTTGGCCTTTAGATGTGAGCAACATCACTACTGGGGGCCGCATTTGGGCACGAACGGGATGCAACTTCGATGGAGCTGGACGTGGCGTCTGCCAAACAGGTGATTGTGGAGGTGTCCTCCAATGCCAAGGCCATGGTCTACCCCCAAACACCCTAGCAGAATATGCACTTAACCAATTTAACAACTTAGATTTTTTTGATATTTCTCTAGTTGATGGGTTCAATGTCCCAATGGACTTTAGTCCCACGGACAATGGATGCACTGGGGGGATACAATGCACGGCTGATATTAATGGGCAGTGTCCTAACGAATTGAAGGCTCAAGGAGGCTGCAATAACCCTTGCACTGTGTTTAAAACTGATCAATATTGCTGCAATAATTCTGGGAGCTGTGGCCCTACAGACTTCTCTAGATTTTTCAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

197

Amino Acids

20.9

Weight (kDa)

4.82

Isoelectric Point (pI)

20.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	2 cut(s)	135, 202
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	137, 208
AgsI	TTSAA	4 cut(s)	109, 385, 478, 583
AhdI	GACNNNNNGTC	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	148, 239, 552
AluI	AGCT	3 cut(s)	148, 239, 552
AoxI	GGCC	4 cut(s)	167, 199, 292, 556
ApeKI	GCWGC	6 cut(s)	74, 119, 122, 145, 492, 534
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	199, 557
AsuHPI	GGTGA	2 cut(s)	37, 275
BaeGI	GKGCMC	1 cut(s)	214
BbvI	GCAGC	6 cut(s)	86, 131, 134, 157, 479, 521
BccI	CCATC	3 cut(s)	41, 227, 371
BceAI	ACGGC	2 cut(s)	110, 459
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	426
BclI	TGATCA	1 cut(s)	523
BfaI	CTAG	3 cut(s)	317, 371, 573
BfmI	CTRYAG	1 cut(s)	561
BfuI	GTATCC	1 cut(s)	426
BisI	GCNGC	7 cut(s)	75, 120, 123, 146, 202, 493, 535
BlsI	GCNGC	7 cut(s)	76, 121, 124, 147, 203, 494, 536
Bme1390I	CCNGG	1 cut(s)	132
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	199, 557
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	2 cut(s)	204, 435
BmsI	GCATC	3 cut(s)	51, 212, 410
BmuI	ACTGGG	2 cut(s)	204, 435
BoxI	GACNNNNGTC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpuEI	CTTGAG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	3 cut(s)	289, 295, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 208
Bse1I	ACTGG	2 cut(s)	199, 430
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	289, 295, 408
BseGI	GGATG	2 cut(s)	227, 425
BseLI	CCNNNNNNNGG	2 cut(s)	137, 208
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	199, 430
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	6 cut(s)	86, 131, 134, 157, 479, 521
BshFI	GGCC	4 cut(s)	169, 201, 294, 558
BslFI	GGGAC	2 cut(s)	374, 390
BslI	CCNNNNNNNGG	2 cut(s)	137, 208
BsmFI	GGGAC	2 cut(s)	374, 390
BsnI	GGCC	4 cut(s)	169, 201, 294, 558
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	523
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	2 cut(s)	135, 202
BspANI	GGCC	4 cut(s)	169, 201, 294, 558
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	199, 430
BssECI	CCNNGG	3 cut(s)	289, 295, 408
BssMI	GATC	1 cut(s)	523
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	289, 295
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	3 cut(s)	101, 155, 511
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	22, 349
BstDSI	CCRYGG	2 cut(s)	295, 408
BstF5I	GGATG	2 cut(s)	227, 425
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	526
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	132
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	6 cut(s)	86, 131, 134, 157, 479, 521
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	169, 201, 294, 558
BtgI	CCRYGG	2 cut(s)	295, 408
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	227, 425
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	4 cut(s)	160, 423, 467, 507
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	199, 557
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	22, 349
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
DraI	TTTAAA	1 cut(s)	517
DriI	GACNNNNNGTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	248
Eco130I	CCWWGG	2 cut(s)	289, 295
Eco32I	GATATC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	289, 295
EcoT22I	ATGCAT	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	289, 295
FaeI	CATG	1 cut(s)	299
FaiI	YATR	4 cut(s)	38, 40, 297, 327
FaqI	GGGAC	2 cut(s)	374, 390
FatI	CATG	1 cut(s)	295
FauNDI	CATATG	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	7 cut(s)	75, 120, 123, 146, 202, 493, 535
FokI	GGATG	2 cut(s)	234, 432
Fsp4HI	GCNGC	7 cut(s)	75, 120, 123, 146, 202, 493, 535
FspBI	CTAG	3 cut(s)	317, 371, 573
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	7 cut(s)	75, 120, 123, 146, 202, 493, 535
HaeIII	GGCC	4 cut(s)	169, 201, 294, 558
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	299
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	2 cut(s)	37, 275
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	573
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	135, 472
HpyCH4III	ACNGT	3 cut(s)	101, 155, 511
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	9 cut(s)	42, 74, 225, 329, 423, 441, 495, 507, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	22, 349
HpySE526I	ACGT	1 cut(s)	244
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	299
HspAI	GCGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	523
LmnI	GCTCC	2 cut(s)	236, 549
LpnPI	CCDG	8 cut(s)	100, 117, 144, 180, 225, 246, 411, 531
Lsp1109I	GCAGC	6 cut(s)	86, 131, 134, 157, 479, 521
LweI	GCATC	3 cut(s)	51, 212, 410
MaeI	CTAG	3 cut(s)	317, 371, 573
MaeII	ACGT	1 cut(s)	244
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	338, 473, 541
MnlI	CCTC	3 cut(s)	266, 290, 482
Mph1103I	ATGCAT	1 cut(s)	44
MseI	TTAA	5 cut(s)	150, 333, 342, 453, 516
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	295
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	7 cut(s)	76, 121, 124, 147, 203, 494, 536
PshAI	GACNNNNGTC	1 cut(s)	402
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	199, 557
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	5 cut(s)	150, 333, 342, 453, 516
SatI	GCNGC	7 cut(s)	75, 120, 123, 146, 202, 493, 535
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	2 cut(s)	199, 557
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	6 cut(s)	150, 241, 247, 265, 277, 554
SfaNI	GCATC	3 cut(s)	51, 212, 410
SfcI	CTRYAG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	3 cut(s)	338, 473, 541
SsiI	CCGC	2 cut(s)	135, 202
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	3 cut(s)	317, 371, 573
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	289, 295
TaaI	ACNGT	3 cut(s)	101, 155, 511
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	231
TasI	AATT	3 cut(s)	338, 473, 541
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	5 cut(s)	150, 333, 342, 453, 516
Tru9I	TTAA	5 cut(s)	150, 333, 342, 453, 516
TscAI	CASTG	4 cut(s)	160, 430, 467, 514
TseI	GCWGC	6 cut(s)	74, 119, 122, 145, 492, 534
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	4 cut(s)	160, 430, 467, 514
Van91I	CCANNNNNTGG	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	453
XbaI	TCTAGA	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	3 cut(s)	317, 371, 573
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.