Prupe.5G099400_v2.0.a1

phosphatidylinositol-3-phosphate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
10749850 .. 10752947
3098 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G099400.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 393 bp
ATGGTGTCTGCTAAAGAACAAATAGCATGCGAAGATCACCTGTTAGACCCTTTTGTTGAGAATTTCGTACTGGAAATCAAAGTCCACTTCGGTGATGGCGTAAGTAGGGGTGGAAGACAAACATTGGAGTGGAGAGCGTCAATTGCTAAACATTTCATTGAAGAGTGGGAATGGCAGTTGTCAATTTTGCCGCGTCTTCTTTCGTTATCTGAACGCCAGCGGCAGTGGAAGGAGGCATTAACTGTATTACGTCCCGCACCATCTAAGCTACTTAACCTTTGCATGCAAAGAGCAAAGTATGACAGTGGGGAAGGAGTGCATCGATTTTCATTGTCTGCAGAAGATAAAGCTGAGGCCCAGCCAAAAGGAAGATCTGGAATTACCATTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.86

Weight (kDa)

6.91

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 193
AciI CCGC 3 cut(s) 191, 220, 255
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 69
AgsI TTSAA 1 cut(s) 161
AleI CACNNNNGTG 1 cut(s) 90
AluBI AGCT 2 cut(s) 268, 350
AluI AGCT 2 cut(s) 268, 350
AoxI GGCC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 29, 104
BbsI GAAGAC 2 cut(s) 121, 188
BbvCI CCTCAGC 1 cut(s) 351
BccI CCATC 2 cut(s) 89, 268
BfmI CTRYAG 1 cut(s) 336
BglII AGATCT 1 cut(s) 371
BisI GCNGC 2 cut(s) 191, 221
BlsI GCNGC 2 cut(s) 192, 222
BmgT120I GGNCC 1 cut(s) 355
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 121, 188
Bpu10I CCTNAGC 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 322
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 322
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 34, 371
BspACI CCGC 3 cut(s) 191, 220, 255
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 343
BspDI ATCGAT 1 cut(s) 322
BspFNI CGCG 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 75
BssMI GATC 2 cut(s) 34, 371
Bst4CI ACNGT 2 cut(s) 244, 305
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 28, 218, 284
BstDEI CTNAG 2 cut(s) 264, 351
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 2 cut(s) 37, 374
BstMBI GATC 2 cut(s) 34, 371
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 2 cut(s) 30, 286
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 121, 188
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
Bsu15I ATCGAT 1 cut(s) 322
BsuRI GGCC 1 cut(s) 356
BsuTUI ATCGAT 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 230, 310
Cac8I GCNNGC 3 cut(s) 28, 218, 284
Cfr13I GGNCC 1 cut(s) 355
ClaI ATCGAT 1 cut(s) 322
CseI GACGC 2 cut(s) 126, 182
Csp6I GTAC 1 cut(s) 68
CviAII CATG 2 cut(s) 27, 283
CviJI RGCY 4 cut(s) 268, 350, 356, 361
CviKI_1 RGCY 4 cut(s) 268, 350, 356, 361
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 264, 351
DpnI GATC 2 cut(s) 36, 373
DpnII GATC 2 cut(s) 34, 371
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
FaeI CATG 2 cut(s) 30, 286
FaiI YATR 3 cut(s) 28, 284, 300
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 26, 282
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 191, 221
Fsp4HI GCNGC 2 cut(s) 191, 221
GluI GCNGC 2 cut(s) 191, 221
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 1 cut(s) 356
HgaI GACGC 2 cut(s) 126, 182
Hin1II CATG 2 cut(s) 30, 286
HphI GGTGA 2 cut(s) 29, 104
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 223, 305
HpyCH4III ACNGT 2 cut(s) 244, 305
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 282, 286, 319, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 264, 351
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 30, 286
Kzo9I GATC 2 cut(s) 34, 371
LpnPI CCDG 5 cut(s) 53, 56, 230, 360, 371
LweI GCATC 1 cut(s) 328
MaeII ACGT 1 cut(s) 250
MalI GATC 2 cut(s) 36, 373
MboI GATC 2 cut(s) 34, 371
MboII GAAGA 6 cut(s) 44, 126, 173, 188, 353, 381
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 371
MluCI AATT 4 cut(s) 61, 141, 183, 378
MnlI CCTC 2 cut(s) 226, 346
MseI TTAA 2 cut(s) 239, 273
MslI CAYNNNNRTG 2 cut(s) 90, 127
MspA1I CMGCKG 1 cut(s) 220
MunI CAATTG 1 cut(s) 141
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 2 cut(s) 34, 371
NlaIII CATG 2 cut(s) 30, 286
NspI RCATGY 2 cut(s) 30, 286
OliI CACNNNNGTG 1 cut(s) 90
PaeI GCATGC 2 cut(s) 30, 286
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PkrI GCNGC 2 cut(s) 192, 222
PspFI CCCAGC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 355
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 2 cut(s) 90, 127
SaqAI TTAA 2 cut(s) 239, 273
SatI GCNGC 2 cut(s) 191, 221
Sau3AI GATC 2 cut(s) 34, 371
Sau96I GGNCC 1 cut(s) 355
SetI ASST 5 cut(s) 42, 253, 270, 279, 352
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 336
SgeI CNNG 9 cut(s) 39, 52, 83, 204, 229, 266, 295, 370, 387
SmiMI CAYNNNNRTG 2 cut(s) 90, 127
SphI GCATGC 2 cut(s) 30, 286
Sse9I AATT 4 cut(s) 61, 141, 183, 378
SsiI CCGC 3 cut(s) 191, 220, 255
TaaI ACNGT 2 cut(s) 244, 305
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 322
TasI AATT 4 cut(s) 61, 141, 183, 378
TauI GCSGC 2 cut(s) 193, 223
Tru1I TTAA 2 cut(s) 239, 273
Tru9I TTAA 2 cut(s) 239, 273
TscAI CASTG 2 cut(s) 230, 310
TspDTI ATGAA 2 cut(s) 145, 318
TspRI CASTG 2 cut(s) 230, 310
XapI RAATTY 1 cut(s) 61
XceI RCATGY 2 cut(s) 30, 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.