Prupe.5G101700_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
10932462 .. 10934001
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G101700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 420 bp
ATGGAGTTAGACCTCAGCTCATTGGCATCTGTAAGAAAATTTGCAGCAGATTTTAAATACTTGGACCTTCCATTGAACATAAATTATTGCACTCTCTCCTTTGTTCGAAGTAACAATGCAGGCACTATGGCAACTCCATTCAAGCTTTCTGAAGACAACATAGAGCTCCATTTTGCAACTAACCATTTAGGTCATTTTCTCCTCACAGATCTTTTGTTGGAGACCATGAAAAGCACATCGCGAGAAAGGAAAACAGAGGGGAGAATTGTCAATGTATCATCACTAGGCCATCGATACGTTACCGTGAAGGGTTTTGTTATGATAAAATTAACGATGAATCAAGATACCACAGATATTATGCTTATGGACCGTCCAAGCTTGGAAACATATTGCATGCTAATGAGCTTACAAGACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

140

Amino Acids

15.83

Weight (kDa)

6.05

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
AccII CGCG 1 cut(s) 241
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 414
AgsI TTSAA 2 cut(s) 76, 142
AluBI AGCT 5 cut(s) 18, 145, 166, 378, 405
AluI AGCT 5 cut(s) 18, 145, 166, 378, 405
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 64, 367
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 64, 367
BanII GRGCYC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 168
BbvCI CCTCAGC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 284
BglII AGATCT 1 cut(s) 208
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme18I GGWCC 2 cut(s) 64, 367
BmgT120I GGNCC 2 cut(s) 64, 367
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 215
BseCI ATCGAT 1 cut(s) 292
BseMII CTCAG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 1 cut(s) 288
BshVI ATCGAT 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 208
Bsp68I TCGCGA 1 cut(s) 241
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 292
BspFNI CGCG 1 cut(s) 241
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 215
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 304, 371
BstACI GRCGYC 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 121, 395
BstDEI CTNAG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 241
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 397
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 292
BsuRI GGCC 1 cut(s) 288
BsuTUI ATCGAT 1 cut(s) 292
BtgZI GCGATG 1 cut(s) 222
BtuMI TCGCGA 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 121, 395
Cfr13I GGNCC 2 cut(s) 64, 367
ClaI ATCGAT 1 cut(s) 292
CviAII CATG 2 cut(s) 226, 394
CviJI RGCY 6 cut(s) 18, 145, 166, 288, 378, 405
CviKI_1 RGCY 6 cut(s) 18, 145, 166, 288, 378, 405
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 64, 367
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 2 cut(s) 229, 397
FaiI YATR 9 cut(s) 80, 128, 161, 227, 320, 359, 365, 388, 395
FatI CATG 2 cut(s) 225, 393
Fnu4HI GCNGC 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 2 cut(s) 229, 397
HindIII AAGCTT 2 cut(s) 143, 376
HinfI GANTC 1 cut(s) 337
Hpy188I TCNGA 2 cut(s) 151, 419
Hpy188III TCNNGA 2 cut(s) 240, 341
HpyAV CCTTC 2 cut(s) 77, 301
HpyCH4III ACNGT 2 cut(s) 304, 371
HpyCH4IV ACGT 2 cut(s) 297, 414
HpyCH4V TGCA 5 cut(s) 44, 90, 119, 176, 393
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 297, 414
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 2 cut(s) 229, 397
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 1 cut(s) 105
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 297, 414
MaeIII GTNAC 2 cut(s) 110, 298
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 4 cut(s) 38, 82, 264, 326
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 23, 212, 250
MseI TTAA 2 cut(s) 54, 329
MslI CAYNNNNRTG 1 cut(s) 398
MvnI CGCG 1 cut(s) 241
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 229, 397
NruI TCGCGA 1 cut(s) 241
NspI RCATGY 1 cut(s) 397
NspV TTCGAA 1 cut(s) 106
PaeI GCATGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 64, 367
PsuI RGATCY 1 cut(s) 208
RruI TCGCGA 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 54, 329
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 2 cut(s) 64, 367
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 2 cut(s) 64, 367
SmiMI CAYNNNNRTG 1 cut(s) 398
SphI GCATGC 1 cut(s) 397
Sse9I AATT 4 cut(s) 38, 82, 264, 326
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 168
TaaI ACNGT 2 cut(s) 304, 371
TaiI ACGT 2 cut(s) 300, 417
TaqI TCGA 2 cut(s) 106, 292
TasI AATT 4 cut(s) 38, 82, 264, 326
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 2 cut(s) 54, 329
Tru9I TTAA 2 cut(s) 54, 329
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 242, 350
VpaK11BI GGWCC 2 cut(s) 64, 367
XapI RAATTY 1 cut(s) 38
XceI RCATGY 1 cut(s) 397
XspI CTAG 1 cut(s) 284
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.