Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0029074

Physical Location & Seq

Genomic Coordinates Forward (+)

11011399 .. 11013587

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G103300.2_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCTGCTACCTGGAGGAGACAAGAATTTACCTCAATTATTTCTTAAATTTGTGCCAGACCTGGTTCATGTGTTTGAAGTGTTTCTGCCCCAACTTCTTTTATATCCCAACCCATTGGATCCATTGAATGGAGAGGCAGCTGCTATGCATGATCGTTCTGCTTATGAACAAAGAGTAAAAGCCTTCGTTGCAGGAGGCAGAGGAGGATTTCAAAATCATAACTGGACTGTTTTTAAGAAAGTTTTGAAGGTCATGAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

88

Amino Acids

9.82

Weight (kDa)

9.16

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029074)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G103300_v2.0.a1 Prupe.5G103300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AclWI	GGATC	2 cut(s)	113, 126
AcsI	RAATTY	2 cut(s)	25, 47
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	77, 127, 212, 247
AjnI	CCWGG	2 cut(s)	10, 60
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	113, 126
ApeKI	GCWGC	3 cut(s)	4, 137, 140
ApoI	RAATTY	2 cut(s)	25, 47
Asp700I	GAANNNNTTC	1 cut(s)	81
BamHI	GGATCC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	127, 149
BciT130I	CCWGG	2 cut(s)	12, 62
BcoDI	GTCTC	1 cut(s)	12
BisI	GCNGC	3 cut(s)	5, 138, 141
BlsI	GCNGC	3 cut(s)	6, 139, 142
Bme1390I	CCNGG	2 cut(s)	12, 62
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	12, 62
BpmI	CTGGAG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	12, 62
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	30, 216
BseXI	GCAGC	2 cut(s)	127, 149
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	118, 151
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	113, 126
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	118, 151
Bst2UI	CCWGG	2 cut(s)	12, 62
Bst4CI	ACNGT	1 cut(s)	229
BstKTI	GATC	2 cut(s)	121, 154
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	118, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	2 cut(s)	12, 62
BstSCI	CCNGG	2 cut(s)	10, 60
BstV1I	GCAGC	2 cut(s)	127, 149
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	118
CciI	TCATGA	1 cut(s)	252
CsiI	ACCWGGT	1 cut(s)	60
CviAII	CATG	3 cut(s)	68, 149, 253
CviJI	RGCY	2 cut(s)	140, 182
CviKI_1	RGCY	2 cut(s)	140, 182
DpnI	GATC	2 cut(s)	120, 153
DpnII	GATC	2 cut(s)	118, 151
EcoRII	CCWGG	2 cut(s)	10, 60
EcoT22I	ATGCAT	1 cut(s)	150
FaeI	CATG	3 cut(s)	71, 152, 256
FaiI	YATR	7 cut(s)	69, 103, 146, 150, 165, 219, 254
FatI	CATG	3 cut(s)	67, 148, 252
Fnu4HI	GCNGC	3 cut(s)	5, 138, 141
Fsp4HI	GCNGC	3 cut(s)	5, 138, 141
GluI	GCNGC	3 cut(s)	5, 138, 141
GsuI	CTGGAG	1 cut(s)	33
Hin1II	CATG	3 cut(s)	71, 152, 256
HinfI	GANTC	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	193, 241
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	148, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	71, 152, 256
Kzo9I	GATC	2 cut(s)	118, 151
LpnPI	CCDG	6 cut(s)	24, 47, 69, 74, 177, 208
Lsp1109I	GCAGC	2 cut(s)	127, 149
MabI	ACCWGGT	1 cut(s)	60
MalI	GATC	2 cut(s)	120, 153
MboI	GATC	2 cut(s)	118, 151
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	3 cut(s)	25, 35, 47
MnlI	CCTC	6 cut(s)	8, 42, 127, 188, 194, 197
Mph1103I	ATGCAT	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	2 cut(s)	45, 234
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	12, 62
MvaI	CCWGG	2 cut(s)	12, 62
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	118, 151
NlaIII	CATG	3 cut(s)	71, 152, 256
NlaIV	GGNNCC	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	150
PagI	TCATGA	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	6, 139, 142
Psp6I	CCWGG	2 cut(s)	10, 60
PspGI	CCWGG	2 cut(s)	10, 60
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	45, 234
SatI	GCNGC	3 cut(s)	5, 138, 141
Sau3AI	GATC	2 cut(s)	118, 151
ScrFI	CCNGG	2 cut(s)	12, 62
SetI	ASST	5 cut(s)	13, 34, 63, 142, 252
SexAI	ACCWGGT	1 cut(s)	60
Sse9I	AATT	3 cut(s)	25, 35, 47
StyD4I	CCNGG	2 cut(s)	10, 60
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	3 cut(s)	25, 35, 47
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	45, 234
Tru9I	TTAA	2 cut(s)	45, 234
TseI	GCWGC	3 cut(s)	4, 137, 140
TspDTI	ATGAA	2 cut(s)	56, 180
Van91I	CCANNNNNTGG	1 cut(s)	128
XapI	RAATTY	2 cut(s)	25, 47
XmnI	GAANNNNTTC	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.