Prupe.5G107900_v2.0.a1

late embryogenesis abundant

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
11367794 .. 11368951
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G107900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 495 bp
ATGGAGCCTGACAAGTTCCCCATATTAGTACCTAAGAAAATGCACAACATGAAATGTTATGCATACATTGCTGCGTTTGCTGTGTTCCATACCTTAATCATACTGGCTTTTGGATTATTCGCGGTGCCAACTGAAGCTCCTACGGTCAGGGTGAGATCTGTGGCAATCCGAAGCCTAGACTACTGTGCTTCAGATGAACCCTTCTTCAACATTACCCTGGTTGTTGAAGCTGCAATGAGGAACAAGAATTTTGGGCATTTTTGGTTTGATCCCAGCACAGCTAATGTCACATATGGGGGCCAGGACTTGGTACGTAGCAGTGCCTGCATTGACTCTTCTGGCGCTTTAGCTCATCAGTGGATTGCAAAGACTCTCCATCACTTTTTGGATTTCCATTTGCTGGTGCCAATGGAGCCAGCATTCTTTGATTTACTGGAAAGCTTTGGACTAGAAAATGTTCTTTTGATGTTTGGGTGTCTAGACTCTAGAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

165

Amino Acids

18.44

Weight (kDa)

5.92

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 124, 403
AccB7I CCANNNNNTGG 2 cut(s) 307, 400
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 2 cut(s) 153, 174
AfaI GTAC 2 cut(s) 30, 312
AfiI CCNNNNNNNGG 2 cut(s) 307, 400
AgsI TTSAA 2 cut(s) 208, 227
AjnI CCWGG 2 cut(s) 216, 300
AluBI AGCT 5 cut(s) 137, 230, 281, 350, 441
AluI AGCT 5 cut(s) 137, 230, 281, 350, 441
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 324
AoxI GGCC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 71, 230
ApoI RAATTY 1 cut(s) 247
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 163
BanI GGYRCC 2 cut(s) 124, 403
BbvI GCAGC 2 cut(s) 58, 217
BccI CCATC 1 cut(s) 384
BciT130I CCWGG 2 cut(s) 218, 302
BfaI CTAG 4 cut(s) 176, 449, 479, 486
BfoI RGCGCY 1 cut(s) 345
BglII AGATCT 1 cut(s) 155
BisI GCNGC 2 cut(s) 72, 231
BlsI GCNGC 2 cut(s) 73, 232
Bme1390I CCNGG 2 cut(s) 218, 302
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 5 cut(s) 6, 126, 299, 405, 414
BmrFI CCNGG 2 cut(s) 218, 302
BsaAI YACGTR 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 400
Bse1I ACTGG 2 cut(s) 108, 438
Bse3DI GCAATG 2 cut(s) 66, 240
BseBI CCWGG 2 cut(s) 218, 302
BseDI CCNNGG 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 307, 400
BseMI GCAATG 2 cut(s) 66, 240
BseNI ACTGG 2 cut(s) 108, 438
BseXI GCAGC 2 cut(s) 58, 217
BseYI CCCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 300
BshNI GGYRCC 2 cut(s) 124, 403
BslI CCNNNNNNNGG 2 cut(s) 307, 400
BsmI GAATGC 1 cut(s) 419
BsnI GGCC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 155, 268
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 300
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 5 cut(s) 6, 126, 299, 405, 414
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 124, 403
BsrDI GCAATG 2 cut(s) 66, 240
BsrI ACTGG 2 cut(s) 108, 438
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 155, 268
Bst2UI CCWGG 2 cut(s) 218, 302
Bst4CI ACNGT 2 cut(s) 145, 185
Bst6I CTCTTC 1 cut(s) 340
BstAPI GCANNNNNTGC 2 cut(s) 68, 324
BstBAI YACGTR 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 325, 417
BstDEI CTNAG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 158, 271
BstMBI GATC 2 cut(s) 155, 268
BstMWI GCNNNNNNNGC 4 cut(s) 68, 77, 324, 412
BstNI CCWGG 2 cut(s) 218, 302
BstSCI CCNGG 2 cut(s) 216, 300
BstSNI TACGTA 1 cut(s) 314
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 58, 217
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 325, 362
Cac8I GCNNGC 2 cut(s) 325, 417
CaiI CAGNNNCTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 29, 311
CviAII CATG 1 cut(s) 49
CviQI GTAC 2 cut(s) 29, 311
DdeI CTNAG 1 cut(s) 33
DpnI GATC 2 cut(s) 157, 270
DpnII GATC 2 cut(s) 155, 268
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco105I TACGTA 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 153, 174
EcoRII CCWGG 2 cut(s) 216, 300
EcoT22I ATGCAT 1 cut(s) 64
FaeI CATG 1 cut(s) 52
FaiI YATR 8 cut(s) 23, 50, 60, 64, 90, 101, 292, 294
FatI CATG 1 cut(s) 48
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 72, 231
Fsp4HI GCNGC 2 cut(s) 72, 231
FspBI CTAG 4 cut(s) 176, 449, 479, 486
GlaI GCGC 1 cut(s) 343
GluI GCNGC 2 cut(s) 72, 231
GsaI CCCAGC 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 300
HhaI GCGC 1 cut(s) 344
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 3 cut(s) 332, 370, 482
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 170, 193
Hpy188III TCNNGA 2 cut(s) 479, 486
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 145, 185
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 5 cut(s) 43, 62, 233, 327, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 77, 324, 412
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 342
Kzo9I GATC 2 cut(s) 155, 268
LmnI GCTCC 3 cut(s) 4, 142, 412
Lsp1109I GCAGC 2 cut(s) 58, 217
MaeI CTAG 4 cut(s) 176, 449, 479, 486
MaeII ACGT 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 286
MalI GATC 2 cut(s) 157, 270
MboI GATC 2 cut(s) 155, 268
MboII GAAGA 2 cut(s) 196, 327
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 247
MlyI GAGTC 3 cut(s) 326, 364, 476
MnlI CCTC 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 218, 302
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 2 cut(s) 218, 302
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 4 cut(s) 68, 77, 324, 412
NdeI CATATG 1 cut(s) 292
NdeII GATC 2 cut(s) 155, 268
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 5 cut(s) 6, 126, 299, 405, 414
NmuCI GTSAC 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 64
PctI GAATGC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 456
PflMI CCANNNNNTGG 2 cut(s) 307, 400
PkrI GCNGC 2 cut(s) 73, 232
PleI GAGTC 3 cut(s) 326, 364, 476
PpsI GAGTC 3 cut(s) 326, 364, 476
Ppu21I YACGTR 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 216, 300
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 216, 300
PspN4I GGNNCC 5 cut(s) 6, 126, 299, 405, 414
PspPI GGNCC 1 cut(s) 298
PstNI CAGNNNCTG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 2 cut(s) 30, 312
RsaNI GTAC 2 cut(s) 29, 311
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 72, 231
Sau3AI GATC 2 cut(s) 155, 268
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 3 cut(s) 326, 364, 476
ScrFI CCNGG 2 cut(s) 218, 302
SetI ASST 8 cut(s) 34, 95, 139, 232, 283, 316, 352, 443
SnaBI TACGTA 1 cut(s) 314
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 122
SspMI CTAG 4 cut(s) 176, 449, 479, 486
StyD4I CCNGG 2 cut(s) 216, 300
TaaI ACNGT 2 cut(s) 145, 185
TaiI ACGT 1 cut(s) 316
TasI AATT 1 cut(s) 247
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 2 cut(s) 325, 362
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 2 cut(s) 71, 230
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 65, 210
TspRI CASTG 2 cut(s) 325, 362
Van91I CCANNNNNTGG 2 cut(s) 307, 400
XapI RAATTY 1 cut(s) 247
XbaI TCTAGA 2 cut(s) 478, 485
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 4 cut(s) 176, 449, 479, 486
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.