Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11704963 .. 11707439

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G113700.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGATCTGAGTCCAAGGTCGCAGACCAGGTCAATATGCCTGAGGAGTTGACCAACCAATTGGTTTTGGTCATCGACTCTGTGATCAGTTGTTTGACTATGAGATTGAGGTTTGCTTGGCTACTAGGATCAAGAGGAGAAAATTATGTGGAGCCTAATGGCATTTGGGCTAGGGTTTCGTTGGAGGAATTCGAGAGATGGATGATAAAGCATGAACGCACATATCCGAATAATTCTGAAAAAGAGAGACGATTTGGAATTTTTAGAACCAGATTTGAGTCGATTGAACTTTTCAACACGCAACAAGAAGGGAAAACAAGTTCATTTAAGAAAGGCATTAATATGTTTTCTGACATGACAGCTGAAGAGTTCTTGTCAATTTATGCTTCATGCCAAAACGACGACCCCTCAAAATATATTTCATCATTTGGAGTAGATTCTACATATGATGTTGCTGAAGACGACTATGCAGATATTCCTCCCGTAAGCATTGATTGGAGGGATGAAAATTTGGTCACTCCGGTGAAAAATCAAGGGCAATGTGGTTCTTGTTGGGCGTTTGCTGCTGTGGCAGCAGTGGAAGGGAGTATGGCTTGGAACTATGGTATCAATACTTCACTGTCCGAGCAGCAAATTTTGGACTGCAGTGGAAATGCCGACGGCTGCAAGGGTGGTTTCACAGTTGCCGCCTTTGACTATGTAATACGAAATGGAGGACTCAACAGTGAAGAAAATTACGGCTATGTCGCTAAGCAGGGAACATGTGACAGCAGCAAGACAGACGAACATCTTGGTCGGATAACTGGTTATAAGAAAGTGCCTCCCAACGAATACGATCTAGCCAAGGCTGTGGCCTGGCAGCCCATCCCAGTTTCAATTTCAATCGGTGCAGGATTTCAGGAATACCAAGGTGGTATACTTAGAGGTGGTTGTTCCTATAACCCATATAAAAACAAACACACTGTTCTAATTGTTGGCTATGGGAGGACCGAAGATCATCACGAGGACTACTGGATAGTAAAAAATTCCTGGGGCGAAGACTGGGGCGAGGAAGGCTATGTCAGAATGTATAAGGGCGTCAATCTGTGTAATATTGCTGACAATGCTATAAGCCCGTTGAATACTTATGATGTGGAACGGCGTAAAACAATAACCCGCAATCGACGTGCTGTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

393

Amino Acids

44.11

Weight (kDa)

4.98

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AccI	GTMKAC	1 cut(s)	916
AciI	CCGC	2 cut(s)	687, 1156
AclWI	GGATC	2 cut(s)	13, 136
AcsI	RAATTY	5 cut(s)	188, 258, 508, 633, 1024
AcuI	CTGAAG	2 cut(s)	384, 477
AcyI	GRCGYC	1 cut(s)	1077
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	5 cut(s)	287, 295, 876, 882, 1120
AjiI	CACGTC	1 cut(s)	1166
AjnI	CCWGG	3 cut(s)	27, 854, 1028
AleI	CACNNNNGTG	1 cut(s)	521
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	13, 136
AoxI	GGCC	1 cut(s)	852
ApeKI	GCWGC	6 cut(s)	563, 572, 628, 663, 771, 859
ApoI	RAATTY	5 cut(s)	188, 258, 508, 633, 1024
AseI	ATTAAT	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	987
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	987
AxyI	CCTNAGG	1 cut(s)	42
BaeI	ACNNNNGTAYC	2 cut(s)	589, 622
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
BauI	CACGAG	1 cut(s)	1001
BbsI	GAAGAC	2 cut(s)	465, 1044
BbvI	GCAGC	6 cut(s)	550, 584, 640, 650, 783, 871
BccI	CCATC	2 cut(s)	192, 872
BceAI	ACGGC	3 cut(s)	676, 754, 1154
BciT130I	CCWGG	3 cut(s)	29, 856, 1030
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	3 cut(s)	125, 171, 839
BfmI	CTRYAG	1 cut(s)	643
BisI	GCNGC	7 cut(s)	564, 573, 629, 664, 687, 772, 860
BlpI	GCTNAGC	1 cut(s)	750
BlsI	GCNGC	7 cut(s)	565, 574, 630, 665, 688, 773, 861
Bme1390I	CCNGG	3 cut(s)	29, 856, 1030
Bme18I	GGWCC	1 cut(s)	987
BmgBI	CACGTC	1 cut(s)	1166
BmgT120I	GGNCC	1 cut(s)	987
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	3 cut(s)	29, 856, 1030
BmrI	ACTGGG	2 cut(s)	863, 1051
BmuI	ACTGGG	2 cut(s)	863, 1051
BpiI	GAAGAC	2 cut(s)	465, 1044
Bpu1102I	GCTNAGC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	1077
BsaJI	CCNNGG	4 cut(s)	15, 843, 907, 1029
BsaWI	WCCGGW	1 cut(s)	520
Bse1I	ACTGG	4 cut(s)	808, 869, 1016, 1046
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	545
BseBI	CCWGG	3 cut(s)	29, 856, 1030
BseDI	CCNNGG	4 cut(s)	15, 843, 907, 1029
BseGI	GGATG	3 cut(s)	207, 508, 864
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	4 cut(s)	808, 869, 1016, 1046
BseRI	GAGGAG	2 cut(s)	59, 150
BseXI	GCAGC	6 cut(s)	550, 584, 640, 650, 783, 871
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	1 cut(s)	854
BsiSI	CCGG	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	854
Bsp143I	GATC	5 cut(s)	5, 84, 128, 835, 994
Bsp1720I	GCTNAGC	1 cut(s)	750
BspACI	CCGC	2 cut(s)	687, 1156
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	647
BspPI	GGATC	2 cut(s)	13, 136
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	4 cut(s)	808, 869, 1016, 1046
BssECI	CCNNGG	4 cut(s)	15, 843, 907, 1029
BssMI	GATC	5 cut(s)	5, 84, 128, 835, 994
BssNAI	GTATAC	1 cut(s)	917
BssNI	GRCGYC	1 cut(s)	1077
BssSI	CACGAG	1 cut(s)	1001
BssT1I	CCWWGG	3 cut(s)	15, 843, 907
Bst1107I	GTATAC	1 cut(s)	917
Bst2BI	CACGAG	1 cut(s)	1001
Bst2UI	CCWGG	3 cut(s)	29, 856, 1030
Bst4CI	ACNGT	4 cut(s)	621, 682, 725, 964
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	1077
BstDEI	CTNAG	4 cut(s)	9, 42, 750, 920
BstF5I	GGATG	3 cut(s)	207, 508, 864
BstKTI	GATC	5 cut(s)	8, 87, 131, 838, 997
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	5 cut(s)	5, 84, 128, 835, 994
BstMWI	GCNNNNNNNGC	5 cut(s)	563, 569, 572, 1053, 1103
BstNI	CCWGG	3 cut(s)	29, 856, 1030
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	3 cut(s)	27, 854, 1028
BstSFI	CTRYAG	1 cut(s)	643
BstV1I	GCAGC	6 cut(s)	550, 584, 640, 650, 783, 871
BstV2I	GAAGAC	2 cut(s)	465, 1044
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	2 cut(s)	61, 850
BstYI	RGATCY	1 cut(s)	5
BstZ17I	GTATAC	1 cut(s)	917
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	854
BtrI	CACGTC	1 cut(s)	1166
BtsCI	GGATG	3 cut(s)	207, 508, 864
BtsI	GCAGTG	2 cut(s)	582, 652
BtsIMutI	CAGTG	5 cut(s)	582, 617, 652, 730, 960
Cfr13I	GGNCC	1 cut(s)	987
CseI	GACGC	1 cut(s)	1066
CsiI	ACCWGGT	1 cut(s)	27
CviAII	CATG	4 cut(s)	212, 355, 390, 762
DdeI	CTNAG	4 cut(s)	9, 42, 750, 920
DpnI	GATC	5 cut(s)	7, 86, 130, 837, 996
DpnII	GATC	5 cut(s)	5, 84, 128, 835, 994
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	3 cut(s)	15, 843, 907
Eco47I	GGWCC	1 cut(s)	987
Eco57I	CTGAAG	2 cut(s)	384, 477
Eco81I	CCTNAGG	1 cut(s)	42
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	3 cut(s)	27, 854, 1028
EcoT14I	CCWWGG	3 cut(s)	15, 843, 907
ErhI	CCWWGG	3 cut(s)	15, 843, 907
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	4 cut(s)	215, 358, 393, 765
FatI	CATG	4 cut(s)	211, 354, 389, 761
FauI	CCCGC	1 cut(s)	1163
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	916
Fnu4HI	GCNGC	7 cut(s)	564, 573, 629, 664, 687, 772, 860
FokI	GGATG	3 cut(s)	214, 515, 851
Fsp4HI	GCNGC	7 cut(s)	564, 573, 629, 664, 687, 772, 860
FspBI	CTAG	3 cut(s)	125, 171, 839
GluI	GCNGC	7 cut(s)	564, 573, 629, 664, 687, 772, 860
HaeIII	GGCC	1 cut(s)	854
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	1 cut(s)	1066
Hin1I	GRCGYC	1 cut(s)	1077
Hin1II	CATG	4 cut(s)	215, 358, 393, 765
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	5 cut(s)	11, 77, 278, 437, 717
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	2 cut(s)	51, 917
Hpy188I	TCNGA	7 cut(s)	10, 228, 238, 352, 625, 798, 1064
Hpy188III	TCNNGA	4 cut(s)	132, 193, 899, 1001
Hpy8I	GTNNAC	2 cut(s)	51, 917
Hpy99I	CGWCG	3 cut(s)	404, 662, 1167
HpyAV	CCTTC	3 cut(s)	302, 575, 1046
HpyCH4III	ACNGT	4 cut(s)	621, 682, 725, 964
HpyCH4IV	ACGT	1 cut(s)	1165
HpyCH4V	TGCA	4 cut(s)	470, 645, 666, 890
HpyF10VI	GCNNNNNNNGC	5 cut(s)	563, 569, 572, 1053, 1103
HpyF3I	CTNAG	4 cut(s)	9, 42, 750, 920
HpySE526I	ACGT	1 cut(s)	1165
Hsp92I	GRCGYC	1 cut(s)	1077
Hsp92II	CATG	4 cut(s)	215, 358, 393, 765
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	5, 84, 128, 835, 994
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	6 cut(s)	550, 584, 640, 650, 783, 871
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	3 cut(s)	125, 171, 839
MaeII	ACGT	1 cut(s)	1165
MaeIII	GTNAC	2 cut(s)	514, 764
MalI	GATC	5 cut(s)	7, 86, 130, 837, 996
MboI	GATC	5 cut(s)	5, 84, 128, 835, 994
MboII	GAAGA	5 cut(s)	377, 470, 740, 1004, 1049
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	20, 71, 287, 711
MmeI	TCCRAC	3 cut(s)	162, 776, 1153
MseI	TTAA	2 cut(s)	327, 339
MslI	CAYNNNNRTG	2 cut(s)	341, 521
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	3 cut(s)	29, 856, 1030
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	3 cut(s)	29, 856, 1030
MwoI	GCNNNNNNNGC	5 cut(s)	563, 569, 572, 1053, 1103
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	5 cut(s)	5, 84, 128, 835, 994
NlaIII	CATG	4 cut(s)	215, 358, 393, 765
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	514, 764
NspI	RCATGY	1 cut(s)	765
OliI	CACNNNNGTG	1 cut(s)	521
PciI	ACATGT	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	437
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	7 cut(s)	565, 574, 630, 665, 688, 773, 861
PleI	GAGTC	4 cut(s)	19, 71, 286, 711
PpsI	GAGTC	4 cut(s)	19, 71, 286, 711
PscI	ACATGT	1 cut(s)	761
PshBI	ATTAAT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	810
Psp6I	CCWGG	3 cut(s)	27, 854, 1028
PspGI	CCWGG	3 cut(s)	27, 854, 1028
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	987
PstI	CTGCAG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	362
RseI	CAYNNNNRTG	2 cut(s)	341, 521
SaqAI	TTAA	2 cut(s)	327, 339
SatI	GCNGC	7 cut(s)	564, 573, 629, 664, 687, 772, 860
Sau3AI	GATC	5 cut(s)	5, 84, 128, 835, 994
Sau96I	GGNCC	1 cut(s)	987
SchI	GAGTC	4 cut(s)	20, 71, 287, 711
ScrFI	CCNGG	3 cut(s)	29, 856, 1030
SetI	ASST	7 cut(s)	21, 33, 113, 364, 913, 928, 1168
SexAI	ACCWGGT	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	987
SmiMI	CAYNNNNRTG	2 cut(s)	341, 521
SsiI	CCGC	2 cut(s)	687, 1156
SspI	AATATT	1 cut(s)	1093
SspMI	CTAG	3 cut(s)	125, 171, 839
StyD4I	CCNGG	3 cut(s)	27, 854, 1028
StyI	CCWWGG	3 cut(s)	15, 843, 907
TaaI	ACNGT	4 cut(s)	621, 682, 725, 964
TaiI	ACGT	1 cut(s)	1168
TaqI	TCGA	4 cut(s)	75, 192, 281, 1162
TaqII	GACCGA	1 cut(s)	1004
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	327, 339
Tru9I	TTAA	2 cut(s)	327, 339
TscAI	CASTG	5 cut(s)	582, 624, 652, 730, 967
TseFI	GTSAC	2 cut(s)	514, 764
TseI	GCWGC	6 cut(s)	563, 572, 628, 663, 771, 859
Tsp45I	GTSAC	2 cut(s)	514, 764
TspDTI	ATGAA	5 cut(s)	228, 312, 378, 411, 519
TspRI	CASTG	5 cut(s)	582, 624, 652, 730, 967
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	987
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	5 cut(s)	188, 258, 508, 633, 1024
XceI	RCATGY	1 cut(s)	765
XmiI	GTMKAC	1 cut(s)	916
XspI	CTAG	3 cut(s)	125, 171, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.