Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11978276 .. 11979492

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G119100.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

CCCTCAGATTCGATTCCCTTTCTGGCTAAAAAACTCCAACCCTCAACCTGCGGGTATGAAGGGTTTGGTCTCACATGCAACCCTAGACACCGATGGCAAAGCATTCTCATCACTGTCCCATCTTCCTCGAGGCACTTCGCCGTCCAAGAAATCGACTACTTGAACCAAAACGTATGGATCACCGACCCCAACAACTGCTTCCCAAGGCGGTTCATGGACAACGACTTCAGTTTTGATGGTTCACCCTTCTCATACGTGCATGCCCTCGAAAGATTCACGTTCCTCAATTGCGCTTACCAAGCAGAACATTACATGGTCACTGGTGTGCCATCGGAGTGGATTAATTCATCAAAGACGTGGTCTTCGTGCTCTGTGATTTCCGAAGCTTTGGTTCCACTCTCAGAACCATTTGAATGGGACTATCTTAATGGTTTTGAGTTGGAATGGTATGTGCCCAATTGCCGTTTTTGTGAAGCCGTACCTGGTAAAGTTTGTGGATTCGACAACAATACAAGGTCCAAGCTTAGGTGCTCTAATGCTATTAATTCAACCAACGGTCTCTCAAAAACTGCGATGTACGGTATGAAGATATGCATAGGAATTACAGGACTATTTTTTCTCGTCATTGTGATCATGTTTAGGCTGGGGGCTTGCGGTCGGGTCAATCGACCCATAATAGAATTATCAGCCATACCTCATCCACAACCTTCTGCAACTCAACTTGGAGAGAGCTTGGAATTGCCCAAGCCTAATGACAACACTTGCTCAATATGTTTGGGAAACTACCAGCCCCAGGAAACATTGAGAACCATACCAGAATGCAACCATTATTTTCATGCTACTTGTATATATGAGTGGCTTAGAAGAAATGCGACGTGCCCGATTTGTCGAAAATCATCCGAGGGTAATACAGGGATTGAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc zf-RING_2

Protein Analysis

309

Amino Acids

34.79

Weight (kDa)

6.2

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	56
AciI	CCGC	3 cut(s)	51, 208, 654
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	211
AfaI	GTAC	2 cut(s)	480, 578
AfiI	CCNNNNNNNGG	2 cut(s)	525, 793
AgsI	TTSAA	3 cut(s)	163, 413, 549
AjiI	CACGTC	2 cut(s)	357, 876
AjnI	CCWGG	2 cut(s)	481, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	3 cut(s)	386, 523, 732
AluI	AGCT	3 cut(s)	386, 523, 732
Alw21I	GWGCWC	2 cut(s)	371, 533
Alw26I	GTCTC	2 cut(s)	74, 563
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	127
ArsI	GACNNNNNNTTYG	6 cut(s)	215, 247, 344, 346, 376, 378
AseI	ATTAAT	2 cut(s)	342, 543
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	516
AsuHPI	GGTGA	2 cut(s)	172, 234
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	516
BaeGI	GKGCMC	2 cut(s)	456, 881
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	371, 533
BccI	CCATC	4 cut(s)	87, 127, 230, 337
BceAI	ACGGC	3 cut(s)	125, 447, 461
BciT130I	CCWGG	2 cut(s)	483, 794
BclI	TGATCA	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	74, 563
BfaI	CTAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	483, 794
Bme18I	GGWCC	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	127
BmgBI	CACGTC	2 cut(s)	357, 876
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	2 cut(s)	483, 794
BpiI	GAAGAC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	256
BsaI	GGTCTC	2 cut(s)	74, 563
BsaJI	CCNNGG	3 cut(s)	203, 792, 900
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 793
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	483, 794
BseDI	CCNNGG	3 cut(s)	203, 792, 900
BseGI	GGATG	2 cut(s)	697, 896
BseLI	CCNNNNNNNGG	2 cut(s)	525, 793
BseMII	CTCAG	2 cut(s)	18, 414
BseNI	ACTGG	1 cut(s)	325
BseSI	GKGCMC	2 cut(s)	456, 881
BseYI	CCCAGC	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	658
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	371, 533
BsiHKCI	CYCGRG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	101, 431
BslI	CCNNNNNNNGG	2 cut(s)	525, 793
BsmAI	GTCTC	2 cut(s)	74, 563
BsmFI	GGGAC	2 cut(s)	101, 431
BsmI	GAATGC	2 cut(s)	102, 824
Bso31I	GGTCTC	2 cut(s)	74, 563
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	4 cut(s)	371, 456, 533, 881
Bsp143I	GATC	2 cut(s)	177, 630
BspACI	CCGC	3 cut(s)	51, 208, 654
BspCNI	CTCAG	2 cut(s)	17, 413
BspLI	GGNNCC	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	2 cut(s)	74, 563
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	203, 792, 900
BssMI	GATC	2 cut(s)	177, 630
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	483, 794
Bst4CI	ACNGT	3 cut(s)	115, 557, 581
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	261, 652
BstDEI	CTNAG	4 cut(s)	4, 400, 524, 860
BstF5I	GGATG	2 cut(s)	697, 896
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	2 cut(s)	180, 633
BstMAI	GTCTC	2 cut(s)	74, 563
BstMBI	GATC	2 cut(s)	177, 630
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	2 cut(s)	483, 794
BstNSI	RCATGY	2 cut(s)	78, 263
BstSCI	CCNGG	2 cut(s)	481, 792
BstSLI	GKGCMC	2 cut(s)	456, 881
BstV2I	GAAGAC	1 cut(s)	354
BstXI	CCANNNNNNTGG	2 cut(s)	336, 414
BtgZI	GCGATG	1 cut(s)	587
BtrI	CACGTC	2 cut(s)	357, 876
BtsCI	GGATG	2 cut(s)	697, 896
BtsIMutI	CAGTG	2 cut(s)	111, 318
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	261, 652
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	516
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	479, 577
CviAII	CATG	6 cut(s)	75, 214, 260, 313, 634, 836
CviQI	GTAC	2 cut(s)	479, 577
DdeI	CTNAG	4 cut(s)	4, 400, 524, 860
DpnI	GATC	2 cut(s)	179, 632
DpnII	GATC	2 cut(s)	177, 630
Eco130I	CCWWGG	1 cut(s)	203
Eco31I	GGTCTC	2 cut(s)	74, 563
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	481, 792
EcoT14I	CCWWGG	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	6 cut(s)	78, 217, 263, 316, 637, 839
FaqI	GGGAC	2 cut(s)	101, 431
FatI	CATG	6 cut(s)	74, 213, 259, 312, 633, 835
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	630
FokI	GGATG	2 cut(s)	684, 883
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	292
GsaI	CCCAGC	1 cut(s)	647
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	6 cut(s)	78, 217, 263, 316, 637, 839
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HindIII	AAGCTT	2 cut(s)	384, 521
HinfI	GANTC	4 cut(s)	8, 13, 273, 498
HphI	GGTGA	2 cut(s)	172, 234
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	5 cut(s)	7, 334, 382, 403, 901
Hpy8I	GTNNAC	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	877
HpyAV	CCTTC	3 cut(s)	53, 256, 717
HpyCH4III	ACNGT	3 cut(s)	115, 557, 581
HpyCH4IV	ACGT	5 cut(s)	171, 255, 278, 356, 875
HpyCH4V	TGCA	5 cut(s)	78, 259, 594, 713, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	4 cut(s)	4, 400, 524, 860
HpySE526I	ACGT	5 cut(s)	171, 255, 278, 356, 875
Hsp92II	CATG	6 cut(s)	78, 217, 263, 316, 637, 839
HspAI	GCGC	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	177, 630
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	5 cut(s)	171, 255, 278, 356, 875
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	179, 632
MboI	GATC	2 cut(s)	177, 630
MboII	GAAGA	4 cut(s)	114, 354, 598, 876
MfeI	CAATTG	2 cut(s)	286, 457
MhlI	GDGCHC	4 cut(s)	371, 456, 533, 881
MluCI	AATT	7 cut(s)	286, 343, 457, 544, 600, 680, 737
MmeI	TCCRAC	2 cut(s)	61, 420
MnlI	CCTC	9 cut(s)	13, 52, 123, 136, 275, 293, 705, 895, 913
Mph1103I	ATGCAT	1 cut(s)	596
MseI	TTAA	3 cut(s)	342, 426, 543
MslI	CAYNNNNRTG	3 cut(s)	323, 334, 412
MspR9I	CCNGG	2 cut(s)	483, 794
MunI	CAATTG	2 cut(s)	286, 457
Mva1269I	GAATGC	2 cut(s)	102, 824
MvaI	CCWGG	2 cut(s)	483, 794
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	177, 630
NlaIII	CATG	6 cut(s)	78, 217, 263, 316, 637, 839
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	596
NspI	RCATGY	2 cut(s)	78, 263
OliI	CACNNNNGTG	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	2 cut(s)	362, 664
PctI	GAATGC	2 cut(s)	102, 824
PfeI	GAWTC	4 cut(s)	8, 13, 273, 498
PflFI	GACNNNGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	256
PshBI	ATTAAT	2 cut(s)	342, 543
Psp6I	CCWGG	2 cut(s)	481, 792
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	2 cut(s)	481, 792
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	516
PspXI	VCTCGAGB	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	480, 578
RsaNI	GTAC	2 cut(s)	479, 577
RseI	CAYNNNNRTG	3 cut(s)	323, 334, 412
SaqAI	TTAA	3 cut(s)	342, 426, 543
Sau3AI	GATC	2 cut(s)	177, 630
Sau96I	GGNCC	1 cut(s)	516
ScrFI	CCNGG	2 cut(s)	483, 794
SduI	GDGCHC	4 cut(s)	371, 456, 533, 881
SexAI	ACCWGGT	1 cut(s)	481
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	516
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	3 cut(s)	323, 334, 412
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	7 cut(s)	286, 343, 457, 544, 600, 680, 737
SsiI	CCGC	3 cut(s)	51, 208, 654
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	481, 792
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	3 cut(s)	115, 557, 581
TaiI	ACGT	5 cut(s)	174, 258, 281, 359, 878
TaqI	TCGA	7 cut(s)	11, 128, 153, 267, 501, 667, 889
TasI	AATT	7 cut(s)	286, 343, 457, 544, 600, 680, 737
TfiI	GAWTC	4 cut(s)	8, 13, 273, 498
Tru1I	TTAA	3 cut(s)	342, 426, 543
Tru9I	TTAA	3 cut(s)	342, 426, 543
TscAI	CASTG	2 cut(s)	118, 325
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	5 cut(s)	72, 202, 336, 599, 824
TspRI	CASTG	2 cut(s)	118, 325
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	516
VspI	ATTAAT	2 cut(s)	342, 543
XceI	RCATGY	2 cut(s)	78, 263
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.