Prupe.5G132100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
12702890 .. 12703283
394 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G132100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 339 bp
ATGGGCAATTGCTTACCACTCTGTAGACACAAAAACAAGTCTCAAGCTCCAAGGGTTGTGACCAAGAATGAGAGTTTCTTGCACATTGTGAAGAACCAGGACAAGATTTTAGAGCACAAAAGGCCTATGATTCTTGAGGATATATCAAAGGACATGGATGGTGCAAGTTGTGGAAAGAGAGTTAGATTGATTATAACAAAGCAAGAGCTTCAAGAATTGGTGTCTAAGAAGATATCAGTGGATGAAATGCTCTTGAGAATTCAGAGAGAGGCAGGGATCAGTGGTGGCAACAACTGTGGAACAAGGTGGAAACCAGTGCTTGAAACCATCCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.75

Weight (kDa)

9.35

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccI GTMKAC 1 cut(s) 25
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 212, 323
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 47, 208
AluI AGCT 2 cut(s) 47, 208
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 284
AoxI GGCC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 2 cut(s) 152, 335
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BpuEI CTTGAG 3 cut(s) 27, 155, 274
BsaJI CCNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 50
BseGI GGATG 3 cut(s) 163, 247, 327
BseNI ACTGG 1 cut(s) 314
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 276
BspANI GGCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 163, 247, 327
BstKTI GATC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 163, 247, 327
BtsIMutI CAGTG 3 cut(s) 243, 286, 321
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 1 cut(s) 154
CviJI RGCY 3 cut(s) 47, 124, 208
CviKI_1 RGCY 3 cut(s) 47, 124, 208
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DraIII CACNNNGTG 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 50
Eco147I AGGCCT 1 cut(s) 124
Eco32I GATATC 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 96
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 157
FaiI YATR 4 cut(s) 128, 143, 155, 194
FatI CATG 1 cut(s) 153
FblI GTMKAC 1 cut(s) 25
FokI GGATG 3 cut(s) 170, 254, 314
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 1 cut(s) 157
HinfI GANTC 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 3 cut(s) 134, 212, 253
Hpy8I GTNNAC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 82, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 83, 110, 258, 327
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 2 cut(s) 103, 241
MfeI CAATTG 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 3 cut(s) 7, 215, 258
MnlI CCTC 2 cut(s) 130, 262
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 276
NlaIII CATG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 58
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 1 cut(s) 130
PsiI TTATAA 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
Sau3AI GATC 1 cut(s) 276
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 117
SetI ASST 3 cut(s) 49, 210, 308
SfcI CTRYAG 1 cut(s) 22
SmlI CTYRAG 3 cut(s) 42, 134, 253
SmoI CTYRAG 3 cut(s) 42, 134, 253
Sse9I AATT 3 cut(s) 7, 215, 258
SseBI AGGCCT 1 cut(s) 124
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 1 cut(s) 333
TasI AATT 3 cut(s) 7, 215, 258
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 3 cut(s) 243, 286, 321
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 3 cut(s) 243, 286, 321
XapI RAATTY 1 cut(s) 258
XmiI GTMKAC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.