Prupe.5G138900_v2.0.a1

Pentatricopeptide repeat-containing protein At5g66520-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
13036243 .. 13036603
361 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G138900.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 321 bp
ATGATGTTTTTAGTTCAAAATTCGTTGATTGGTATGTACTCTGCATGTGGGTTTCTGAATAGTGCACGTACATTGTTTGATGAAATGTTGGAAAGGGATGTTGTTTCGTGGAACTCGATGATTAAGGCAATGAATCTGTTTGGGAAGATGAACAAGAGAAACATTATTACTTGGAATTCCATGATTACTGGGTTTTTTTCAAGGTGGTCAGCCATGGAACTTTTCCATGAAATGCAGATCACCAGTGGTGATATGCTTTGTGCTCATCTGGGTGCAACTGATCATGGGATATGGGTGCATGGGTACCTGAGGAGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

107

Amino Acids

12.17

Weight (kDa)

6.89

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 19, 175
AfaI GTAC 3 cut(s) 38, 70, 305
AgsI TTSAA 2 cut(s) 17, 201
Alw21I GWGCWC 2 cut(s) 67, 265
Alw44I GTGCAC 1 cut(s) 63
ApaLI GTGCAC 1 cut(s) 63
ApoI RAATTY 2 cut(s) 19, 175
Asp718I GGTACC 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 232, 260
AxyI CCTNAGG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 67
BanI GGYRCC 1 cut(s) 303
Bbv12I GWGCWC 2 cut(s) 67, 265
BclI TGATCA 1 cut(s) 280
BfaI CTAG 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 305
BmrI ACTGGG 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 193, 243
Bse21I CCTNAGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 2 cut(s) 193, 243
BseSI GKGCMC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 2 cut(s) 67, 265
Bsp1286I GDGCHC 2 cut(s) 67, 265
Bsp143I GATC 2 cut(s) 237, 280
Bsp19I CCATGG 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 2 cut(s) 193, 243
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 237, 280
BssT1I CCWWGG 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 308
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 2 cut(s) 240, 283
BstMBI GATC 2 cut(s) 237, 280
BstNSI RCATGY 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 67
Bsu36I CCTNAGG 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 250
Csp6I GTAC 3 cut(s) 37, 69, 304
CviAII CATG 6 cut(s) 45, 181, 214, 227, 284, 299
CviJI RGCY 1 cut(s) 212
CviKI_1 RGCY 1 cut(s) 212
CviQI GTAC 3 cut(s) 37, 69, 304
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 239, 282
DpnII GATC 2 cut(s) 237, 280
Eco130I CCWWGG 1 cut(s) 213
Eco81I CCTNAGG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 6 cut(s) 48, 184, 217, 230, 287, 302
FaiI YATR 9 cut(s) 35, 46, 182, 215, 228, 254, 285, 292, 300
FatI CATG 6 cut(s) 44, 180, 213, 226, 283, 298
FbaI TGATCA 1 cut(s) 280
FokI GGATG 1 cut(s) 110
FspBI CTAG 1 cut(s) 319
Hin1II CATG 6 cut(s) 48, 184, 217, 230, 287, 302
HinfI GANTC 1 cut(s) 133
HphI GGTGA 2 cut(s) 232, 260
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 44, 65, 235, 275, 298
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 6 cut(s) 48, 184, 217, 230, 287, 302
KpnI GGTACC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 237, 280
LpnPI CCDG 3 cut(s) 174, 254, 256
MaeI CTAG 1 cut(s) 319
MaeII ACGT 1 cut(s) 67
MalI GATC 2 cut(s) 239, 282
MboI GATC 2 cut(s) 237, 280
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 67, 265
MluCI AATT 2 cut(s) 19, 175
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 1 cut(s) 303
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 270
NcoI CCATGG 1 cut(s) 213
NdeII GATC 2 cut(s) 237, 280
NlaIII CATG 6 cut(s) 48, 184, 217, 230, 287, 302
NlaIV GGNNCC 1 cut(s) 305
NspI RCATGY 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PfeI GAWTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 305
RsaI GTAC 3 cut(s) 38, 70, 305
RsaNI GTAC 3 cut(s) 37, 69, 304
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 123
Sau3AI GATC 2 cut(s) 237, 280
SduI GDGCHC 2 cut(s) 67, 265
SetI ASST 3 cut(s) 70, 206, 309
SmiMI CAYNNNNRTG 1 cut(s) 270
Sse9I AATT 2 cut(s) 19, 175
SspMI CTAG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 19, 175
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 4 cut(s) 96, 146, 164, 243
TspRI CASTG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 63
XapI RAATTY 2 cut(s) 19, 175
XceI RCATGY 1 cut(s) 48
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.