Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13350700 .. 13351473

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G145100.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGGGTTAACTCCATGGCCAAGGATGGTCAGAATGAGCAACCAACCACTGCAACAAATTCATCAGAAAATTCACAGCCAGCTCCTTCCCCTTTACCTCCACCTTCTCCTAAGTTCTCAGACGTGCTTGCATTCAGTGGGCCAGCACCAGAAAGAATCAACGGCAGGATAGCAATGGTGGGATTTGTTGCAGCTCTGGCAGTGGAACTATCCAAGGGCCAGGATGTATTTGCTCAAATATCCCATTGGGTGAGTGTTGAGTCGAAATCAAAAGGGGTGATGACCTCAGATGCTGAGCTGTGGAATGGAAGGCTGGCCATGTTGGGCCTTGTAGCTATGGCCTTTACTGAGTATGTGAAGGGTGGAACCCCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

126

Amino Acids

13.19

Weight (kDa)

5.75

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	18, 315
AcsI	RAATTY	2 cut(s)	58, 70
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	83, 194, 298, 335
AluI	AGCT	4 cut(s)	83, 194, 298, 335
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	6 cut(s)	18, 140, 217, 315, 325, 339
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	58, 70
AspS9I	GGNCC	3 cut(s)	140, 217, 325
AsuHPI	GGTGA	2 cut(s)	262, 289
BalI	TGGCCA	2 cut(s)	20, 317
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	192
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	140, 217, 325
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	15, 21, 213
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	15, 21, 213
BseGI	GGATG	2 cut(s)	31, 229
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	4 cut(s)	132, 285, 300, 339
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	6 cut(s)	20, 142, 219, 317, 327, 341
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	6 cut(s)	20, 142, 219, 317, 327, 341
Bsp1720I	GCTNAGC	1 cut(s)	294
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	6 cut(s)	20, 142, 219, 317, 327, 341
BspCNI	CTCAG	4 cut(s)	131, 286, 299, 340
BspLI	GGNNCC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	15, 21, 213
BssT1I	CCWWGG	3 cut(s)	15, 21, 213
Bst2UI	CCWGG	1 cut(s)	221
BstC8I	GCNNGC	4 cut(s)	81, 129, 144, 315
BstDEI	CTNAG	5 cut(s)	111, 118, 286, 294, 348
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	31, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	203
BsuRI	GGCC	6 cut(s)	20, 142, 219, 317, 327, 341
BtgI	CCRYGG	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	31, 229
BtsI	GCAGTG	2 cut(s)	48, 207
BtsIMutI	CAGTG	4 cut(s)	48, 142, 207, 378
Cac8I	GCNNGC	4 cut(s)	81, 129, 144, 315
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	140, 217, 325
CviAII	CATG	2 cut(s)	16, 319
DdeI	CTNAG	5 cut(s)	111, 118, 286, 294, 348
EaeI	YGGCCR	2 cut(s)	18, 315
Eco130I	CCWWGG	3 cut(s)	15, 21, 213
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	3 cut(s)	15, 21, 213
ErhI	CCWWGG	3 cut(s)	15, 21, 213
FaeI	CATG	2 cut(s)	19, 322
FaiI	YATR	4 cut(s)	17, 320, 338, 354
FatI	CATG	2 cut(s)	15, 318
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	38, 236
Fsp4HI	GCNGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	6 cut(s)	20, 142, 219, 317, 327, 341
Hin1II	CATG	2 cut(s)	19, 322
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	156, 260
HpaI	GTTAAC	1 cut(s)	10
HphI	GGTGA	2 cut(s)	262, 289
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	4 cut(s)	33, 67, 121, 289
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	96, 114, 303, 352
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	3 cut(s)	53, 131, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	5 cut(s)	111, 118, 286, 294, 348
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	19, 322
KspAI	GTTAAC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	93, 151, 156, 162, 182, 206, 233, 299
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	123
MlsI	TGGCCA	2 cut(s)	20, 317
MluCI	AATT	2 cut(s)	58, 70
MluNI	TGGCCA	2 cut(s)	20, 317
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	2 cut(s)	108, 295
Mox20I	TGGCCA	2 cut(s)	20, 317
MscI	TGGCCA	2 cut(s)	20, 317
MseI	TTAA	1 cut(s)	9
Msp20I	TGGCCA	2 cut(s)	20, 317
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	15
NlaIII	CATG	2 cut(s)	19, 322
NlaIV	GGNNCC	1 cut(s)	367
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	3 cut(s)	140, 217, 325
PstNI	CAGNNNCTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	192
Sau96I	GGNCC	3 cut(s)	140, 217, 325
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	8 cut(s)	85, 100, 106, 126, 196, 287, 300, 337
SfaNI	GCATC	1 cut(s)	280
Sse9I	AATT	2 cut(s)	58, 70
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	3 cut(s)	15, 21, 213
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	263
TasI	AATT	2 cut(s)	58, 70
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	4 cut(s)	55, 142, 207, 378
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	4 cut(s)	55, 142, 207, 378
XapI	RAATTY	2 cut(s)	58, 70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.