Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13825741 .. 13828326

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G153900.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGCCTGTTTGGTGGGCTTGAATTGGATTCGAGCCCACACCGAGCCTTCTCCCTCCAATCCAGTCTTCATCATATCACCCCGATAAAACTAGGTTCTTCACCAATCACTTCCGGCGAACTTGAGCTGTTTCCAGCGAACCTCACCCATCTCTGGCTCAAACCATGTCATCTCCGATCTCCTATTTCTTTTCTGGACTTCTTCGTCATAAGTGATTCTTCTGTGGTCGGTGTCTCCTTCGTCCCCTGTGCTTCTCCTTCATCGTCTTCGCCGATTAAGATCTTGCGTTTTGTTTCGATTGCCATAGATTCTAAGCGGCAGTTATCAAATATGGCGTTCCGAGCATTCTTGAACAGTCCAGTTGGTCCAAAAACAACTCACTTTTGGGGACCTGTGGCAAACTGGGGCTTCGTTGCCGCTGGATTGGCGGATATGAACAAACCTCCAGAAATGATTTCTGGCAACATGACAGCAGCAATGTGCGTTTATTCTGCATTGTTTATGAGATTCGCATGGATGGTACAACCTCGCAACTATCTACTTTTGGCATGCCATGTCTCAAATGAGACTGTCCAACTCTATCAACTCTCTCGCTGGGCAAGGGGTCAGGGGTACTTTACCCAGAAGAAGGATGAACCGGAGTCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006848 GO:0006850 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0010119 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1901475 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

217

Amino Acids

23.9

Weight (kDa)

8.98

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AciI	CCGC	3 cut(s)	316, 417, 428
AfaI	GTAC	2 cut(s)	522, 614
AfiI	CCNNNNNNNGG	2 cut(s)	153, 628
AgsI	TTSAA	2 cut(s)	23, 352
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw26I	GTCTC	3 cut(s)	238, 560, 562
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	473
AspS9I	GGNCC	3 cut(s)	4, 365, 389
AsuHPI	GGTGA	3 cut(s)	70, 93, 136
AvaII	GGWCC	2 cut(s)	365, 389
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	59, 258
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	2 cut(s)	156, 511
BcoDI	GTCTC	3 cut(s)	238, 560, 562
BfaI	CTAG	1 cut(s)	92
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	3 cut(s)	317, 417, 474
BlsI	GCNGC	3 cut(s)	318, 418, 475
Bme18I	GGWCC	2 cut(s)	365, 389
BmgT120I	GGNCC	3 cut(s)	4, 365, 389
BmiI	GGNNCC	1 cut(s)	390
BmrI	ACTGGG	2 cut(s)	412, 640
BmuI	ACTGGG	2 cut(s)	412, 640
BpiI	GAAGAC	2 cut(s)	59, 258
BpmI	CTGGAG	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 628
Bse1I	ACTGG	4 cut(s)	63, 359, 407, 646
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	278
BseGI	GGATG	2 cut(s)	522, 637
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	153, 628
BseMI	GCAATG	1 cut(s)	483
BseNI	ACTGG	4 cut(s)	63, 359, 407, 646
BseXI	GCAGC	1 cut(s)	485
BseYI	CCCAGC	1 cut(s)	594
BshFI	GGCC	1 cut(s)	6
BsiSI	CCGG	2 cut(s)	114, 638
BslFI	GGGAC	3 cut(s)	227, 402, 628
BslI	CCNNNNNNNGG	2 cut(s)	153, 628
BsmAI	GTCTC	3 cut(s)	238, 560, 562
BsmFI	GGGAC	3 cut(s)	227, 402, 628
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	176, 279
BspACI	CCGC	3 cut(s)	316, 417, 428
BspANI	GGCC	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	4 cut(s)	63, 359, 407, 646
BssMI	GATC	2 cut(s)	176, 279
Bst4CI	ACNGT	2 cut(s)	356, 571
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	2 cut(s)	522, 637
BstKTI	GATC	2 cut(s)	179, 282
BstMAI	GTCTC	3 cut(s)	238, 560, 562
BstMBI	GATC	2 cut(s)	176, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 425
BstNSI	RCATGY	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	2 cut(s)	59, 258
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	522, 637
Cac8I	GCNNGC	1 cut(s)	550
Cfr13I	GGNCC	3 cut(s)	4, 365, 389
Csp6I	GTAC	2 cut(s)	521, 613
CviAII	CATG	5 cut(s)	165, 466, 513, 549, 554
CviJI	RGCY	7 cut(s)	6, 19, 36, 47, 127, 157, 408
CviKI_1	RGCY	7 cut(s)	6, 19, 36, 47, 127, 157, 408
CviQI	GTAC	2 cut(s)	521, 613
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	178, 281
DpnII	GATC	2 cut(s)	176, 279
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	365, 389
EcoO109I	RGGNCCY	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	5 cut(s)	168, 469, 516, 552, 557
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FaqI	GGGAC	3 cut(s)	227, 402, 628
FatI	CATG	5 cut(s)	164, 465, 512, 548, 553
Fnu4HI	GCNGC	3 cut(s)	317, 417, 474
FokI	GGATG	2 cut(s)	529, 644
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	317, 417, 474
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	3 cut(s)	317, 417, 474
GsaI	CCCAGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	2 cut(s)	114, 638
Hin1II	CATG	5 cut(s)	168, 469, 516, 552, 557
HinfI	GANTC	5 cut(s)	29, 215, 308, 507, 641
HpaII	CCGG	2 cut(s)	114, 638
HphI	GGTGA	3 cut(s)	70, 93, 136
Hpy188I	TCNGA	2 cut(s)	176, 341
Hpy188III	TCNNGA	3 cut(s)	194, 349, 446
HpyAV	CCTTC	4 cut(s)	58, 247, 267, 622
HpyCH4III	ACNGT	2 cut(s)	356, 571
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 425
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	168, 469, 516, 552, 557
Kzo9I	GATC	2 cut(s)	176, 279
Lsp1109I	GCAGC	1 cut(s)	485
MaeI	CTAG	1 cut(s)	92
MalI	GATC	2 cut(s)	178, 281
MboI	GATC	2 cut(s)	176, 279
MboII	GAAGA	6 cut(s)	59, 90, 193, 210, 258, 637
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	4 cut(s)	65, 152, 453, 537
MseI	TTAA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	114, 638
Mva1269I	GAATGC	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	341, 425
NdeII	GATC	2 cut(s)	176, 279
NlaIII	CATG	5 cut(s)	168, 469, 516, 552, 557
NlaIV	GGNNCC	1 cut(s)	390
NspI	RCATGY	1 cut(s)	552
PaeI	GCATGC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	4 cut(s)	29, 215, 308, 507
PkrI	GCNGC	3 cut(s)	318, 418, 475
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
PpuMI	RGGWCCY	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	3 cut(s)	4, 365, 389
PspPPI	RGGWCCY	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	279
RsaI	GTAC	2 cut(s)	522, 614
RsaNI	GTAC	2 cut(s)	521, 613
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	3 cut(s)	317, 417, 474
Sau3AI	GATC	2 cut(s)	176, 279
Sau96I	GGNCC	3 cut(s)	4, 365, 389
SchI	GAGTC	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	97, 129, 144, 394, 445, 529
SinI	GGWCC	2 cut(s)	365, 389
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	552
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	3 cut(s)	316, 417, 428
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	356, 571
TaqI	TCGA	2 cut(s)	32, 296
TasI	AATT	1 cut(s)	23
TauI	GCSGC	2 cut(s)	319, 419
TfiI	GAWTC	4 cut(s)	29, 215, 308, 507
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	59, 249, 449, 648
VpaK11BI	GGWCC	2 cut(s)	365, 389
XceI	RCATGY	1 cut(s)	552
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.