Prupe.5G154300_v2.0.a1

Protein of unknown function (DUF3537)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
13841555 .. 13843132
1578 bp
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UTR
Exon/CDS
Intron
Prupe.5G154300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 303 bp
ATGCGGAGATTCTTGTTCGTGGATAGGTATCACGGTCATAAGCTTCAGTACCGTGATGAATATATACAACAGATCAATGTGAGTTTGGCAATACCCATAGCTGCCTTATTTAATTTCTTTCCTTTTCATTTTATGATTGTGAGCTTTATGTTTGTACCTGACTCGAGTAATACATTACTTGCTGAATATATCTTAATCTCCTTTCCTTTTCTAATCCATGTTTTGAATGTTTCTGGTGAAGTCGTGCTTGGGGACAATGAAGTCTCTGTGCAGATGCAAATACGCTGCGAGTTCACATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3537

Protein Analysis

101

Amino Acids

11.8

Weight (kDa)

5.68

Isoelectric Point (pI)

26.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AciI CCGC 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 2 cut(s) 50, 156
AgsI TTSAA 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 3 cut(s) 43, 101, 144
AluI AGCT 3 cut(s) 43, 101, 144
Alw26I GTCTC 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 101, 285
AsuHPI GGTGA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 163
BbvI GCAGC 2 cut(s) 88, 272
BcoDI GTCTC 1 cut(s) 268
BisI GCNGC 2 cut(s) 102, 286
BlsI GCNGC 2 cut(s) 103, 287
BmeT110I CYCGRG 1 cut(s) 163
BmsI GCATC 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 27
BseJI GATNNNNATC 1 cut(s) 27
BseXI GCAGC 2 cut(s) 88, 272
BsgI GTGCAG 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 163
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 4
BssMI GATC 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 35, 53
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 88, 272
Csp6I GTAC 2 cut(s) 49, 155
CviAII CATG 1 cut(s) 218
CviJI RGCY 3 cut(s) 43, 101, 144
CviKI_1 RGCY 3 cut(s) 43, 101, 144
CviQI GTAC 2 cut(s) 49, 155
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 163
FaeI CATG 1 cut(s) 221
FaiI YATR 9 cut(s) 39, 63, 65, 98, 134, 149, 189, 219, 298
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 102, 286
Fsp4HI GCNGC 2 cut(s) 102, 286
GluI GCNGC 2 cut(s) 102, 286
Hin1II CATG 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 2 cut(s) 9, 161
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 294
Hpy8I GTNNAC 1 cut(s) 294
HpyCH4III ACNGT 2 cut(s) 35, 53
HpyCH4V TGCA 2 cut(s) 271, 277
Hsp92II CATG 1 cut(s) 221
Kzo9I GATC 1 cut(s) 72
LpnPI CCDG 2 cut(s) 171, 219
Lsp1109I GCAGC 2 cut(s) 88, 272
LweI GCATC 1 cut(s) 264
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 155
MseI TTAA 2 cut(s) 111, 194
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 221
PaeR7I CTCGAG 1 cut(s) 163
PfeI GAWTC 1 cut(s) 9
PkrI GCNGC 2 cut(s) 103, 287
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 163
RsaI GTAC 2 cut(s) 50, 156
RsaNI GTAC 2 cut(s) 49, 155
SaqAI TTAA 2 cut(s) 111, 194
SatI GCNGC 2 cut(s) 102, 286
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 155
SetI ASST 5 cut(s) 29, 45, 103, 146, 160
SfaNI GCATC 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 4
TaaI ACNGT 2 cut(s) 35, 53
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 112
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 111, 194
Tru9I TTAA 2 cut(s) 111, 194
TseI GCWGC 2 cut(s) 101, 285
TspDTI ATGAA 3 cut(s) 72, 116, 273
XhoI CTCGAG 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.