Prupe.5G155100_v2.0.a1

ABC1 protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
13889480 .. 13890170
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G155100.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 264 bp
ATGAGGCCAAGAACAGTGAGAAATGCTTGGAAAATTTTCAGAAGCTTTCTACTCATATTGCAGCTTATGTATATGCACCAAGGTCTATTGGAATCTAAGCCCATCAGAAGACTTGGAATTCAACTTGATGAAGTTGCAAGATTAGTTAGTGAAACTTTTGCAGAAATGATGTTCAAACACGGGTTTGTGCATTGTGACCCACATGCTGCCAACTTGTTAGTCCGACCTCTGCCTTATAGCCTTATAGCGGCAAGAGCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.18

Weight (kDa)

10.48

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 248
AcsI RAATTY 2 cut(s) 33, 117
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 2 cut(s) 122, 175
AluBI AGCT 2 cut(s) 45, 64
AluI AGCT 2 cut(s) 45, 64
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 61, 206
ApoI RAATTY 2 cut(s) 33, 117
Asp700I GAANNNNTTC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 73, 193
BccI CCATC 1 cut(s) 110
BfaI CTAG 1 cut(s) 262
BisI GCNGC 3 cut(s) 62, 207, 249
BlsI GCNGC 3 cut(s) 63, 208, 250
BpiI GAAGAC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 73, 193
BshFI GGCC 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 247
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 7
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 73, 193
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 21
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 7, 45, 64, 100, 240
CviKI_1 RGCY 5 cut(s) 7, 45, 64, 100, 240
DdeI CTNAG 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 206
FaiI YATR 7 cut(s) 56, 68, 72, 74, 204, 237, 245
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 62, 207, 249
Fsp4HI GCNGC 3 cut(s) 62, 207, 249
FspBI CTAG 1 cut(s) 262
GluI GCNGC 3 cut(s) 62, 207, 249
HaeIII GGCC 1 cut(s) 7
Hin1II CATG 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 41, 107, 224
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 5 cut(s) 61, 76, 137, 161, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 206
Lsp1109I GCAGC 2 cut(s) 73, 193
MaeI CTAG 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 1 cut(s) 120
MluCI AATT 2 cut(s) 33, 117
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 254
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 194
NspI RCATGY 1 cut(s) 206
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 63, 208, 250
SatI GCNGC 3 cut(s) 62, 207, 249
SetI ASST 4 cut(s) 47, 66, 85, 229
Sse9I AATT 2 cut(s) 33, 117
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 16
TasI AATT 2 cut(s) 33, 117
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 2 cut(s) 61, 206
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 1 cut(s) 21
XapI RAATTY 2 cut(s) 33, 117
XceI RCATGY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.