Prupe.5G155200_v2.0.a1

ABC1 protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
13890814 .. 13891902
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G155200.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 297 bp
ATGAGACCTTGGAATATGGTCATTGACCCAGCTTTTGATCATTTGGTTATACAGGGCAGCAGAAGTGGCAGTTCAGAACTGCAGATTATGAGTATTCACTATGGGGACTGCCTGAGGGAAGCAGTGAGAGGGCAAAAGCTAAGCATGAAGTTCAGGTCTGCACGTAAGCTTCAAGAATTATGTTTCAGCAATGGAGGCGTATATATATCAGGCTCGGTCAGCACCTTGGACGGCTGTTTAAAAAGAGCTAGGGCAGAGCTAAGTAAATGCTCAATCAGAACAGTATGTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

10.91

Weight (kDa)

9.19

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 5 cut(s) 32, 139, 169, 248, 259
AluI AGCT 5 cut(s) 32, 139, 169, 248, 259
ApeKI GCWGC 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AxyI CCTNAGG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 247
BclI TGATCA 1 cut(s) 37
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 58
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 8, 225
Bse21I CCTNAGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 8, 225
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 37
Bsp1720I GCTNAGC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 105
BspMAI CTGCAG 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 8, 225
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 8, 225
Bst4CI ACNGT 1 cut(s) 283
BstBAI YACGTR 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 113, 140, 260
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 66, 195, 219
BstSFI CTRYAG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 113
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
CviAII CATG 1 cut(s) 145
CviJI RGCY 7 cut(s) 32, 139, 169, 213, 234, 248, 259
CviKI_1 RGCY 7 cut(s) 32, 139, 169, 213, 234, 248, 259
DdeI CTNAG 3 cut(s) 113, 140, 260
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DraI TTTAAA 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 8, 225
Eco81I CCTNAGG 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 8, 225
ErhI CCWWGG 2 cut(s) 8, 225
FaeI CATG 1 cut(s) 148
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 144
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 58
GsaI CCCAGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 148
HindIII AAGCTT 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 76, 278
Hpy188III TCNNGA 2 cut(s) 173, 290
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 82, 161
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 195, 219
HpyF3I CTNAG 3 cut(s) 113, 140, 260
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 38, 42, 125, 139, 195
Lsp1109I GCAGC 1 cut(s) 69
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 163
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MluCI AATT 1 cut(s) 176
MnlI CCTC 3 cut(s) 108, 122, 188
MseI TTAA 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 66, 195, 219
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 148
PkrI GCNGC 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 37
SetI ASST 9 cut(s) 10, 34, 141, 158, 166, 171, 227, 250, 261
SfcI CTRYAG 1 cut(s) 80
Sse9I AATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 249
StyI CCWWGG 2 cut(s) 8, 225
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 166
TaqII GACCGA 1 cut(s) 205
TasI AATT 1 cut(s) 176
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 1 cut(s) 129
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.