Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14467456 .. 14468103

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G167600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTAAAAGCACTACAAACTTTCAATATCAGATGGTGTGGGTGTTTAACAGCCTTGTCGGACGAGATACTCAATCTTGTAAGGTTGAGGCACCTCAAAATGTTCAAGAGCATGTTCCAAGATGTTCATGGGATGAAGCTACCTGCAGGAATAGGAAGCTTAAAAAATCTTCTGTCCCTCACAGCTATACATGCTGGTGGTGGAATTGCTGAAGAATTAGGTAACCTGATACAGCTCAGAAGACTTGGAGTGATGGATGTGGCTGAAGAGAATATCAGTGAGCTATTTGTCTCCATTACAAAGATGCCGGCTCTTCCTTCCTTGTCAATTGAAGCTAAACACGCCTTCAACAAGGGAAACCTTATCCTCCTGGATTCATTCTCACCTCCACCATTTCTTCAAAAGCTTCGCCTAGAAGGCGTCCTAGAAAAGCTACCTACTTCATTTGGTTCCTCGGAAAGGCTTACAAATTTAAGATTAGGCAACTCTCATATGTCTGAGAACTCGAAATTGGTACTTCATCTGCTACCCAACTTGAAAAATCTGACCCCTTGGAATGCTTATGATGCAAAACGAATGGGGAAAGAGTTCTGTAGTGCTGGTGGGTTTCCCAAGCTCGAGGTTCTCAGCTTTGCTTCATGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

216

Amino Acids

23.7

Weight (kDa)

9.25

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	2 cut(s)	231, 285
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	6 cut(s)	25, 106, 332, 349, 401, 538
AjnI	CCWGG	1 cut(s)	369
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
Alw26I	GTCTC	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	617
ApoI	RAATTY	1 cut(s)	469
Asp700I	GAANNNNTTC	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	247
BccI	CCATC	2 cut(s)	27, 247
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	413, 425
BfmI	CTRYAG	2 cut(s)	144, 592
BfuAI	ACCTGC	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	617
BmiI	GGNNCC	2 cut(s)	92, 451
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	294, 556
BpiI	GAAGAC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	453, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse118I	RCCGGY	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	453, 551
BseGI	GGATG	2 cut(s)	138, 262
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	250, 489, 640
BshNI	GGYRCC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	562
BsoBI	CYCGRG	1 cut(s)	617
BspCNI	CTCAG	3 cut(s)	249, 490, 639
BspLI	GGNNCC	2 cut(s)	92, 451
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	453, 551
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	371
Bst6I	CTCTTC	2 cut(s)	261, 318
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	236, 498, 626
BstEII	GGTNACC	1 cut(s)	221
BstENI	CCTNNNNNAGG	1 cut(s)	457
BstF5I	GGATG	2 cut(s)	138, 262
BstMAI	GTCTC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 341, 417, 566
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	115, 194
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	2 cut(s)	144, 592
BstV2I	GAAGAC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	138, 262
BtsIMutI	CAGTG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	307
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	515
CviAII	CATG	4 cut(s)	112, 128, 191, 639
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	3 cut(s)	236, 498, 626
Eam1104I	CTCTTC	2 cut(s)	261, 318
EarI	CTCTTC	2 cut(s)	261, 318
Eco130I	CCWWGG	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	231, 285
Eco88I	CYCGRG	1 cut(s)	617
Eco91I	GGTNACC	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	457
EcoO65I	GGTNACC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	4 cut(s)	115, 131, 194, 642
FaiI	YATR	8 cut(s)	113, 129, 188, 192, 492, 494, 564, 640
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	4 cut(s)	111, 127, 190, 638
FauNDI	CATATG	1 cut(s)	492
FokI	GGATG	2 cut(s)	145, 269
FspBI	CTAG	2 cut(s)	413, 425
HapII	CCGG	1 cut(s)	308
HgaI	GACGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	4 cut(s)	115, 131, 194, 642
HindIII	AAGCTT	2 cut(s)	157, 404
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	375
Hpy188I	TCNGA	6 cut(s)	32, 61, 239, 457, 499, 546
Hpy188III	TCNNGA	2 cut(s)	106, 645
HpyAV	CCTTC	3 cut(s)	327, 355, 410
HpyCH4V	TGCA	2 cut(s)	146, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 341, 417, 566
HpyF3I	CTNAG	3 cut(s)	236, 498, 626
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	115, 131, 194, 642
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
LguI	GCTCTTC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	132, 156, 180, 239, 321, 356, 383, 585
LweI	GCATC	2 cut(s)	294, 556
MaeI	CTAG	2 cut(s)	413, 425
MaeIII	GTNAC	1 cut(s)	221
MboII	GAAGA	6 cut(s)	161, 224, 252, 278, 305, 389
MfeI	CAATTG	1 cut(s)	327
MluCI	AATT	5 cut(s)	204, 215, 327, 469, 509
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	7 cut(s)	81, 104, 188, 377, 396, 463, 613
MroNI	GCCGGC	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	3 cut(s)	47, 161, 473
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	4 cut(s)	191, 341, 417, 566
NaeI	GCCGGC	1 cut(s)	309
NdeI	CATATG	1 cut(s)	492
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	4 cut(s)	115, 131, 194, 642
NlaIV	GGNNCC	2 cut(s)	92, 451
NspI	RCATGY	2 cut(s)	115, 194
PaeR7I	CTCGAG	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	562
PdiI	GCCGGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	369
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	92, 451
PspXI	VCTCGAGB	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	47, 161, 473
SbfI	CCTGCAGG	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	371
SdaI	CCTGCAGG	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	294, 556
SfcI	CTRYAG	2 cut(s)	144, 592
Sfr274I	CTCGAG	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse8387I	CCTGCAGG	1 cut(s)	148
Sse9I	AATT	5 cut(s)	204, 215, 327, 469, 509
SspMI	CTAG	2 cut(s)	413, 425
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	551
TaqI	TCGA	2 cut(s)	506, 618
TasI	AATT	5 cut(s)	204, 215, 327, 469, 509
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	3 cut(s)	47, 161, 473
Tru9I	TTAA	3 cut(s)	47, 161, 473
TscAI	CASTG	1 cut(s)	283
TspDTI	ATGAA	6 cut(s)	116, 149, 366, 432, 509, 627
TspRI	CASTG	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	457
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	2 cut(s)	115, 194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	2 cut(s)	413, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.