Prupe.5G176200_v2.0.a1

Belongs to the spermidine spermine synthase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
14948595 .. 14949998
1404 bp
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UTR
Exon/CDS
Intron
Prupe.5G176200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 252 bp
ATGTCATTATATTTTTTACACCAACTATTAAGTTTACTAACGCCCATATATTTGCTCAATTTTGCTCCATACTTATTTGTGGTTTTTTCTTCAGGTGTTGCTTGTTGGAGGGGTAGCATTTTGAGAGAAATATCTCGGCATATATGTGAAACAGACATAATGATCATTGATGTTTATACGCGCTTTCTCCCTGAGGTAGCAGTGGGATATGAGGATCCCAGAGTGCAAGTACACATATCAAATGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.54

Weight (kDa)

5.79

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 181
AclWI GGATC 2 cut(s) 209, 222
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 231
AlwI GGATC 2 cut(s) 209, 222
AspLEI GCGC 1 cut(s) 183
AxyI CCTNAGG 1 cut(s) 192
BamHI GGATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 216
Bse21I CCTNAGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 181
Bsp143I GATC 2 cut(s) 162, 214
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 2 cut(s) 209, 222
BssMI GATC 2 cut(s) 162, 214
BstDEI CTNAG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 2 cut(s) 165, 217
BstMBI GATC 2 cut(s) 162, 214
BstUI CGCG 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
Bsu36I CCTNAGG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 230
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 1 cut(s) 192
DpnI GATC 2 cut(s) 164, 216
DpnII GATC 2 cut(s) 162, 214
Eco57I CTGAAG 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 192
FbaI TGATCA 1 cut(s) 162
GlaI GCGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 35, 232
Hpy8I GTNNAC 2 cut(s) 35, 232
HpyCH4V TGCA 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 192
HspAI GCGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 2 cut(s) 162, 214
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 78, 204, 232
MalI GATC 2 cut(s) 164, 216
MboI GATC 2 cut(s) 162, 214
MboII GAAGA 1 cut(s) 81
MflI RGATCY 1 cut(s) 214
MluCI AATT 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 3 cut(s) 102, 187, 205
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 144
MvnI CGCG 1 cut(s) 181
NdeII GATC 2 cut(s) 162, 214
NlaIV GGNNCC 1 cut(s) 216
NmeAIII GCCGAG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 162, 214
SetI ASST 2 cut(s) 97, 198
SgeI CNNG 7 cut(s) 105, 114, 147, 192, 203, 231, 239
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 1 cut(s) 58
TasI AATT 1 cut(s) 58
TatI WGTACW 1 cut(s) 229
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 207
TspRI CASTG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.