Prupe.5G196300_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
15903032 .. 15904586
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G196300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1218 bp
ATGACAGATGGATTTAGATTTAGCAATGTTCCAGACGAAGTTGCCCATCGTATTCTTTCCTTCCTCGCCATAACAGACCTCACTCGTTTCTGCTGCGTGTCGAAAAGATGCAGAGAGCTTCCTCACTCAGCTTCATCATTGGATTTTGATCTATCTGCCAGTGACTACACTTTTGCATCCACTTGCGAAAAGCGGATACAGTTGTTGAATTATTTGGACAGTTTCTTGAGCCGTCATGGGGATAATAAGATACAGCGCTTTCGTGTTCGTTTGGAGTGTCATTGCGTGGAGAAGAAGATCAAATGGATGGTTGATAAGACACGAAGCTTTCGCGTTCGAAGAGAAGCATGCGAGTGTAGGAAGGAGTATTCTCGGATTGTGAGATGGGTGGAAATTGCAGTAAGGAGTGGAGTTGAAGTGCTTCATCTTGAAATCTTTATAGATGAAAAGCAATGTGGCCAGGATCCCTTGGTTCCGTCCTGCGTCTTTCTATGTGGATCTTTGAAGACTCTAGAGTTGGACTTTGGCATGAATTATCCCAAAGTTCTTAAGAAGCCCTCCTCCTCCAGTTTTTCCTCCAATCTCCAACGCCTGGACTTGCGAAACGTTGAGATAGACGAAGGGTTTTTCGAATGGATGTCATCATCCTGCAAATGCCTGAAGGAATTAAGTCTTGACAACTGCAGGGCAGAAAGTATCAACATCCAGAGCTCCTCCTTGGAATCATTTAGGTACATATACGACGATGATGACCTCTCCGATTTCGACATTATTGCTCCAAATCTCAAGTGTGTGGCATGGAAGGCCAATATGTTTGTGTTCCAAAATGTGGAGAAATGTACTCACTTAGAAAAAGTTGAGCTGCTTCTGCAACCTCAGAAACATGATGCTCTGGTCTTGTTTGAGGTTCTTCGGTGTATAAGCACGGTTAAACATCTTACTCTAAACCACGAGACAACCAGGAATTGTTCCAAGTTTGATACGAGATATTGGAAATCGCTAAACCTTGATTTTGTTCATAAGCTTGAGGAGGTAGACATTCATATGCTAATTGGATCTAATGCTGTTGAGTTTGCAAGATATGTCCTCGAGCATGCTCAAAAACTGAAGAAAATGAGGATTGTTCATACGGCAGAGCAATCTAAAGTTCTACGGAGGGTGAATGAGAGCAAGAAGATTTCCGATGCCACACTTGTGTTTGAAGAAGCTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

406

Amino Acids

47.19

Weight (kDa)

6.89

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 592, 829
AccI GTMKAC 1 cut(s) 1035
AccII CGCG 1 cut(s) 333
AciI CCGC 1 cut(s) 193
AclI AACGTT 1 cut(s) 606
AclWI GGATC 4 cut(s) 458, 471, 505, 1063
AcoI YGGCCR 1 cut(s) 457
AcuI CTGAAG 2 cut(s) 680, 1127
AfaI GTAC 2 cut(s) 734, 841
AfeI AGCGCT 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 238, 592, 829
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 5 cut(s) 208, 416, 431, 505, 1202
AjnI CCWGG 3 cut(s) 459, 591, 959
AleI CACNNNNGTG 1 cut(s) 1193
AluBI AGCT 7 cut(s) 118, 131, 327, 711, 862, 1024, 1208
AluI AGCT 7 cut(s) 118, 131, 327, 711, 862, 1024, 1208
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 1 cut(s) 947
AlwI GGATC 4 cut(s) 458, 471, 505, 1063
Ama87I CYCGRG 1 cut(s) 1088
Aor51HI AGCGCT 1 cut(s) 257
AoxI GGCC 2 cut(s) 457, 804
ApeKI GCWGC 2 cut(s) 93, 862
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 1171
AsuII TTCGAA 2 cut(s) 337, 630
AvaI CYCGRG 1 cut(s) 1088
BaeI ACNNNNGTAYC 2 cut(s) 188, 221
BalI TGGCCA 1 cut(s) 459
BamHI GGATCC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 713
BauI CACGAG 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 80, 849
BccI CCATC 4 cut(s) 2, 54, 301, 378
BceAI ACGGC 2 cut(s) 216, 1146
BcgI CGANNNNNNTGC 2 cut(s) 755, 789
BciT130I CCWGG 3 cut(s) 461, 593, 961
BciVI GTATCC 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 947
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 1 cut(s) 682
BfoI RGCGCY 1 cut(s) 259
BfrI CTTAAG 1 cut(s) 548
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 2 cut(s) 94, 863
BlsI GCNGC 2 cut(s) 95, 864
Bme1390I CCNGG 3 cut(s) 461, 593, 961
BmeT110I CYCGRG 1 cut(s) 1088
BmiI GGNNCC 2 cut(s) 465, 474
BmrFI CCNGG 3 cut(s) 461, 593, 961
BmsI GCATC 4 cut(s) 98, 185, 877, 1174
BpiI GAAGAC 1 cut(s) 512
BpmI CTGGAG 1 cut(s) 550
Bpu14I TTCGAA 2 cut(s) 337, 630
BpuEI CTTGAG 3 cut(s) 247, 770, 1046
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 468, 717
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 592, 829
Bse1I ACTGG 2 cut(s) 159, 567
Bse3DI GCAATG 3 cut(s) 31, 280, 458
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 3 cut(s) 461, 593, 961
BseDI CCNNGG 2 cut(s) 468, 717
BseGI GGATG 5 cut(s) 176, 312, 642, 644, 702
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 3 cut(s) 238, 592, 829
BseMI GCAATG 3 cut(s) 31, 280, 458
BseMII CTCAG 2 cut(s) 141, 890
BseNI ACTGG 2 cut(s) 159, 567
BseRI GAGGAG 4 cut(s) 550, 553, 703, 1043
BseXI GCAGC 2 cut(s) 80, 849
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 2 cut(s) 459, 806
BsiHKAI GWGCWC 1 cut(s) 713
BsiHKCI CYCGRG 1 cut(s) 1088
BslI CCNNNNNNNGG 3 cut(s) 238, 592, 829
BsmAI GTCTC 1 cut(s) 947
BsnI GGCC 2 cut(s) 459, 806
BsoBI CYCGRG 1 cut(s) 1088
Bsp119I TTCGAA 2 cut(s) 337, 630
Bsp1286I GDGCHC 1 cut(s) 713
Bsp143I GATC 5 cut(s) 148, 297, 463, 497, 1055
BspACI CCGC 1 cut(s) 193
BspANI GGCC 2 cut(s) 459, 806
BspCNI CTCAG 2 cut(s) 140, 889
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 465, 474
BspMAI CTGCAG 1 cut(s) 686
BspPI GGATC 4 cut(s) 458, 471, 505, 1063
BspT104I TTCGAA 2 cut(s) 337, 630
BspTI CTTAAG 1 cut(s) 548
BsrDI GCAATG 3 cut(s) 31, 280, 458
BsrI ACTGG 2 cut(s) 159, 567
BssECI CCNNGG 2 cut(s) 468, 717
BssMI GATC 5 cut(s) 148, 297, 463, 497, 1055
BssSI CACGAG 1 cut(s) 950
BssT1I CCWWGG 2 cut(s) 468, 717
Bst2BI CACGAG 1 cut(s) 950
Bst2UI CCWGG 3 cut(s) 461, 593, 961
Bst4CI ACNGT 3 cut(s) 201, 221, 928
Bst6I CTCTTC 1 cut(s) 334
BstAFI CTTAAG 1 cut(s) 548
BstBI TTCGAA 2 cut(s) 337, 630
BstC8I GCNNGC 2 cut(s) 349, 1095
BstDEI CTNAG 3 cut(s) 127, 847, 876
BstF5I GGATG 5 cut(s) 176, 312, 642, 644, 702
BstFNI CGCG 1 cut(s) 333
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 5 cut(s) 151, 300, 466, 500, 1058
BstMAI GTCTC 1 cut(s) 947
BstMBI GATC 5 cut(s) 148, 297, 463, 497, 1055
BstMWI GCNNNNNNNGC 2 cut(s) 803, 868
BstNI CCWGG 3 cut(s) 461, 593, 961
BstNSI RCATGY 2 cut(s) 351, 1097
BstSCI CCNGG 3 cut(s) 459, 591, 959
BstSFI CTRYAG 1 cut(s) 682
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 80, 849
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 3 cut(s) 463, 497, 1055
BstYI RGATCY 3 cut(s) 463, 497, 1055
BsuI GTATCC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 459, 806
BtsCI GGATG 5 cut(s) 176, 312, 642, 644, 702
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 349, 1095
CfoI GCGC 1 cut(s) 258
CseI GACGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 733, 840
CviAII CATG 6 cut(s) 236, 348, 529, 798, 884, 1094
CviQI GTAC 2 cut(s) 733, 840
DdeI CTNAG 3 cut(s) 127, 847, 876
DpnI GATC 5 cut(s) 150, 299, 465, 499, 1057
DpnII GATC 5 cut(s) 148, 297, 463, 497, 1055
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 711
Eco130I CCWWGG 2 cut(s) 468, 717
Eco24I GRGCYC 1 cut(s) 713
Eco47III AGCGCT 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 2 cut(s) 680, 1127
Eco88I CYCGRG 1 cut(s) 1088
EcoICRI GAGCTC 1 cut(s) 711
EcoRII CCWGG 3 cut(s) 459, 591, 959
EcoT14I CCWWGG 2 cut(s) 468, 717
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 2 cut(s) 468, 717
FaeI CATG 6 cut(s) 239, 351, 532, 801, 887, 1097
FatI CATG 6 cut(s) 235, 347, 528, 797, 883, 1093
FauNDI CATATG 1 cut(s) 1044
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 2 cut(s) 94, 863
FokI GGATG 5 cut(s) 163, 319, 631, 649, 689
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 2 cut(s) 94, 863
FspBI CTAG 1 cut(s) 512
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 94, 863
GsuI CTGGAG 1 cut(s) 550
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 2 cut(s) 459, 806
HgaI GACGC 1 cut(s) 472
HhaI GCGC 1 cut(s) 258
Hin1II CATG 6 cut(s) 239, 351, 532, 801, 887, 1097
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HindIII AAGCTT 2 cut(s) 325, 1022
HinfI GANTC 2 cut(s) 508, 722
HphI GGTGA 1 cut(s) 1171
Hpy166II GTNNAC 1 cut(s) 1036
Hpy188I TCNGA 4 cut(s) 375, 760, 879, 1183
Hpy188III TCNNGA 6 cut(s) 32, 226, 428, 512, 674, 706
Hpy8I GTNNAC 1 cut(s) 1036
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 5 cut(s) 70, 355, 614, 655, 796
HpyCH4III ACNGT 3 cut(s) 201, 221, 928
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 7 cut(s) 111, 176, 398, 651, 684, 871, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 868
HpyF3I CTNAG 3 cut(s) 127, 847, 876
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 6 cut(s) 239, 351, 532, 801, 887, 1097
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 5 cut(s) 148, 297, 463, 497, 1055
LmnI GCTCC 2 cut(s) 716, 781
Lsp1109I GCAGC 2 cut(s) 80, 849
LweI GCATC 4 cut(s) 98, 185, 877, 1174
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 1 cut(s) 161
MalI GATC 5 cut(s) 150, 299, 465, 499, 1057
MboI GATC 5 cut(s) 148, 297, 463, 497, 1055
MboII GAAGA 8 cut(s) 304, 307, 351, 517, 902, 1120, 1186, 1214
MflI RGATCY 3 cut(s) 463, 497, 1055
MhlI GDGCHC 1 cut(s) 713
MlsI TGGCCA 1 cut(s) 459
MluCI AATT 6 cut(s) 208, 393, 532, 665, 964, 1050
MluNI TGGCCA 1 cut(s) 459
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 2 cut(s) 498, 610
Mox20I TGGCCA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 420
MscI TGGCCA 1 cut(s) 459
MseI TTAA 3 cut(s) 549, 668, 930
MslI CAYNNNNRTG 3 cut(s) 352, 1043, 1193
Msp20I TGGCCA 1 cut(s) 459
MspCI CTTAAG 1 cut(s) 548
MspR9I CCNGG 3 cut(s) 461, 593, 961
MvaI CCWGG 3 cut(s) 461, 593, 961
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 803, 868
NdeI CATATG 1 cut(s) 1044
NdeII GATC 5 cut(s) 148, 297, 463, 497, 1055
NlaIII CATG 6 cut(s) 239, 351, 532, 801, 887, 1097
NlaIV GGNNCC 2 cut(s) 465, 474
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 2 cut(s) 351, 1097
NspV TTCGAA 2 cut(s) 337, 630
OliI CACNNNNGTG 1 cut(s) 1193
PaeI GCATGC 2 cut(s) 351, 1097
PaeR7I CTCGAG 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 722
PflMI CCANNNNNTGG 2 cut(s) 592, 829
PkrI GCNGC 2 cut(s) 95, 864
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 713
Psp1406I AACGTT 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 459, 591, 959
PspGI CCWGG 3 cut(s) 459, 591, 959
PspN4I GGNNCC 2 cut(s) 465, 474
PspXI VCTCGAGB 1 cut(s) 1088
PstI CTGCAG 1 cut(s) 686
PsuI RGATCY 3 cut(s) 463, 497, 1055
RsaI GTAC 2 cut(s) 734, 841
RsaNI GTAC 2 cut(s) 733, 840
RseI CAYNNNNRTG 3 cut(s) 352, 1043, 1193
SacI GAGCTC 1 cut(s) 713
SaqAI TTAA 3 cut(s) 549, 668, 930
SatI GCNGC 2 cut(s) 94, 863
Sau3AI GATC 5 cut(s) 148, 297, 463, 497, 1055
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 3 cut(s) 461, 593, 961
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 4 cut(s) 98, 185, 877, 1174
SfcI CTRYAG 1 cut(s) 682
Sfr274I CTCGAG 1 cut(s) 1088
SfuI TTCGAA 2 cut(s) 337, 630
SlaI CTCGAG 1 cut(s) 1088
SmiMI CAYNNNNRTG 3 cut(s) 352, 1043, 1193
SmlI CTYRAG 5 cut(s) 226, 548, 785, 1025, 1088
SmoI CTYRAG 5 cut(s) 226, 548, 785, 1025, 1088
SphI GCATGC 2 cut(s) 351, 1097
Sse9I AATT 6 cut(s) 208, 393, 532, 665, 964, 1050
SsiI CCGC 1 cut(s) 193
SspMI CTAG 1 cut(s) 512
SstI GAGCTC 1 cut(s) 713
StyD4I CCNGG 3 cut(s) 459, 591, 959
StyI CCWWGG 2 cut(s) 468, 717
TaaI ACNGT 3 cut(s) 201, 221, 928
TaiI ACGT 1 cut(s) 609
TaqI TCGA 5 cut(s) 101, 337, 630, 765, 1089
TasI AATT 6 cut(s) 208, 393, 532, 665, 964, 1050
TatI WGTACW 1 cut(s) 839
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 3 cut(s) 549, 668, 930
Tru9I TTAA 3 cut(s) 549, 668, 930
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 93, 862
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 7 cut(s) 123, 413, 459, 545, 1007, 1031, 1115
TspGWI ACGGA 2 cut(s) 465, 1168
TspRI CASTG 1 cut(s) 166
Van91I CCANNNNNTGG 2 cut(s) 592, 829
Vha464I CTTAAG 1 cut(s) 548
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 2 cut(s) 351, 1097
XhoI CTCGAG 1 cut(s) 1088
XmiI GTMKAC 1 cut(s) 1035
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.