Prupe.5G205000_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
16419229 .. 16420760
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G205000.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 1377 bp
ATGCTGTCAACGCCCTTTAATTTTGATTTGGATACCAATAGGGCCCAGCTCAGGCCAGCCCAGCAGCCTTCCCCTCATTATTTAATACGGGTCAGAGGGATACCAATAGGTTTGTACCTGTTGTCCTGCGTGTATAGGAGAGGAGACGGCTGCCCTATCGACAAAACTGTAGTTTCGCAGTTGACAACAAGAAGACTAATGTTCCAGCAAAAAAAATCAAGAAGACTAGTGGCTTCTTATACAACTGATGTTGCTCCTCCTCCTCCTCCCCAAACATCCGCTCTCCGCCGCAGTGTTTCCAAACGGGCAAGCACCCGAGCCCCATACAAATATCCCGACCAACTGCTGCCGCTCGCCTGGTCCCACGACTCCCTAACCACCCTCAAGCTCATCTGCAACCTCCGAGACGACGATTATGATCTCGGAAAATACTATTTACAAGCGTTTTACAGGACGGCGATTTGGCTCCACCACAACCACCCCAAGACTTTAGCCTGCAACGCCGACACTATCGTCTCCGAGTTTTCCAAGTCTGTCGGGACTATGGATGACCTCGTCGAGATTCTCTACCGCCTCAGTAAGAAAGACAATAATAATACCATCGCCATGGCCAACAGCAACTCGGATTATCGGTTCCTACACGACCGGGTTTCGGATATATTCGCGGACTACTTAAGGGAAGATATTCAAAACTTGGAGAAGCAGCAGGAGGAGATACTAAGCTCAGCTGCCTTCGTATGCCCTCCTGTCGGCTCCTCCCTCGACCGTGCCACGCTGCTGTGTGAAAGCATTGCGAGGAAGGTTTTTCCGATAGAATCCCAAGGGCTTCAGGAGGCACATTACGCGGACAAAGTCCGAGATCGGCTGAGTAAGGAGTTGCTGTATTTGGAGGACTTGAAAGCCTCCAAGATTGAGCTTGAGGCCGATGCTCTGCTTCCACATGAGATCATAGGCTATGTGAATGATGGGGATGTCGGACAAGCGGCTGAGCTTCAGTGGAAGGCAATGGTGGAGGAGGTCTACTTAAAGCAGGGCAAGTTCAGCAACTGCTTGGTTGCGTGCAACGTCTCGAGTGGACTCTTCAAGGATGTGTCTGCGGGTTTGGCTGTGCTGGTGTCTCAACTGGGTGAAGAGCCATGGAAAGGAAAGGAGAAAGGGTACGGTGATGCAGTGCCACAGATTGTGTTTTGGCAGCTAGACCACTACGGGACGGCGTCCGTGCCTTGTCGTCGGCGACCAGGGGTGGCCACGCTGGGTGGCTTCTCCAATAATTTGTTCAAGTCCTTCTTGGATAACGATGGGGAAGTTGGCCCGCACCATGTCATGGAAGCAGCCATCTCTGGTCCACAGTATCAAAATCTGGCTGTAGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

459

Amino Acids

51.36

Weight (kDa)

6.43

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 1324
AccBSI CCGCTC 2 cut(s) 281, 352
AccI GTMKAC 1 cut(s) 1020
AccII CGCG 2 cut(s) 665, 845
AcoI YGGCCR 2 cut(s) 609, 1245
AcuI CTGAAG 2 cut(s) 812, 977
AcyI GRCGYC 1 cut(s) 1214
AfaI GTAC 2 cut(s) 116, 1160
AfiI CCNNNNNNNGG 5 cut(s) 51, 652, 749, 1142, 1324
AflII CTTAAG 1 cut(s) 673
AgsI TTSAA 4 cut(s) 689, 898, 1084, 1279
AhlI ACTAGT 1 cut(s) 226
AjnI CCWGG 2 cut(s) 356, 1237
AjuI GAANNNNNNNTTGG 2 cut(s) 1259, 1291
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 7 cut(s) 49, 388, 723, 728, 916, 991, 1195
AluI AGCT 7 cut(s) 49, 388, 723, 728, 916, 991, 1195
Alw26I GTCTC 5 cut(s) 138, 399, 520, 1072, 1122
AlwNI CAGNNNCTG 1 cut(s) 1047
Ama87I CYCGRG 2 cut(s) 315, 1069
AoxI GGCC 6 cut(s) 42, 53, 609, 921, 1245, 1309
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 8 cut(s) 64, 150, 346, 703, 728, 775, 1192, 1331
Asp700I GAANNNNTTC 1 cut(s) 684
AspS9I GGNCC 5 cut(s) 42, 43, 360, 1310, 1343
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 2 cut(s) 1139, 1175
AvaI CYCGRG 2 cut(s) 315, 1069
AvaII GGWCC 2 cut(s) 360, 1343
BaeGI GKGCMC 1 cut(s) 46
BalI TGGCCA 2 cut(s) 611, 1247
BanII GRGCYC 2 cut(s) 46, 322
BbsI GAAGAC 2 cut(s) 199, 229
BbvI GCAGC 8 cut(s) 76, 137, 333, 715, 715, 762, 1204, 1343
BccI CCATC 4 cut(s) 608, 959, 1292, 1343
BceAI ACGGC 3 cut(s) 163, 471, 1227
BciT130I CCWGG 2 cut(s) 358, 1239
BciVI GTATCC 2 cut(s) 25, 93
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 5 cut(s) 138, 399, 520, 1072, 1122
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 2 cut(s) 227, 1196
BfmI CTRYAG 2 cut(s) 168, 1365
BfrI CTTAAG 1 cut(s) 673
BfuI GTATCC 2 cut(s) 25, 93
BlpI GCTNAGC 2 cut(s) 724, 987
Bme1390I CCNGG 3 cut(s) 358, 647, 1239
Bme18I GGWCC 2 cut(s) 360, 1343
BmeT110I CYCGRG 2 cut(s) 315, 1069
BmgT120I GGNCC 5 cut(s) 42, 43, 360, 1310, 1343
BmiI GGNNCC 5 cut(s) 44, 362, 467, 635, 754
BmrFI CCNGG 3 cut(s) 358, 647, 1239
BmrI ACTGGG 1 cut(s) 1133
BmsI GCATC 2 cut(s) 916, 1156
BmuI ACTGGG 1 cut(s) 1133
BpiI GAAGAC 2 cut(s) 199, 229
Bpu10I CCTNAGC 1 cut(s) 50
Bpu1102I GCTNAGC 2 cut(s) 724, 987
BpuEI CTTGAG 2 cut(s) 368, 938
BpuMI CCSGG 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 1214
BsaJI CCNNGG 4 cut(s) 606, 820, 1136, 1238
BsaXI ACNNNNNCTCC 4 cut(s) 866, 896, 1142, 1172
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 652, 749, 1142, 1324
Bse1I ACTGG 1 cut(s) 1128
Bse3DI GCAATG 2 cut(s) 789, 1011
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 358, 1239
BseDI CCNNGG 4 cut(s) 606, 820, 1136, 1238
BseGI GGATG 4 cut(s) 275, 553, 976, 1093
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 5 cut(s) 51, 652, 749, 1142, 1324
BseMI GCAATG 2 cut(s) 789, 1011
BseMII CTCAG 5 cut(s) 64, 589, 738, 857, 978
BseNI ACTGG 1 cut(s) 1128
BseRI GAGGAG 8 cut(s) 156, 246, 249, 252, 255, 725, 745, 1028
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 8 cut(s) 76, 137, 333, 715, 715, 762, 1204, 1343
BseYI CCCAGC 3 cut(s) 45, 60, 1252
Bsh1236I CGCG 2 cut(s) 665, 845
Bsh1285I CGRYCG 2 cut(s) 646, 766
BshFI GGCC 6 cut(s) 44, 55, 611, 923, 1247, 1311
BsiEI CGRYCG 2 cut(s) 646, 766
BsiHKCI CYCGRG 2 cut(s) 315, 1069
BsiSI CCGG 1 cut(s) 646
BslFI GGGAC 3 cut(s) 346, 553, 1222
BslI CCNNNNNNNGG 5 cut(s) 51, 652, 749, 1142, 1324
BsmAI GTCTC 5 cut(s) 138, 399, 520, 1072, 1122
BsmBI CGTCTC 4 cut(s) 138, 399, 520, 1072
BsmFI GGGAC 3 cut(s) 346, 553, 1222
BsnI GGCC 6 cut(s) 44, 55, 611, 923, 1247, 1311
BsoBI CYCGRG 2 cut(s) 315, 1069
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 46, 322
Bsp143I GATC 3 cut(s) 418, 859, 945
Bsp1720I GCTNAGC 2 cut(s) 724, 987
Bsp19I CCATGG 2 cut(s) 606, 1136
BspANI GGCC 6 cut(s) 44, 55, 611, 923, 1247, 1311
BspCNI CTCAG 5 cut(s) 63, 588, 737, 858, 979
BspFNI CGCG 2 cut(s) 665, 845
BspLI GGNNCC 5 cut(s) 44, 362, 467, 635, 754
BspQI GCTCTTC 1 cut(s) 1125
BspTI CTTAAG 1 cut(s) 673
BsrBI CCGCTC 2 cut(s) 281, 352
BsrDI GCAATG 2 cut(s) 789, 1011
BsrI ACTGG 1 cut(s) 1128
BssECI CCNNGG 4 cut(s) 606, 820, 1136, 1238
BssMI GATC 3 cut(s) 418, 859, 945
BssNI GRCGYC 1 cut(s) 1214
BssT1I CCWWGG 3 cut(s) 606, 820, 1136
Bst2UI CCWGG 2 cut(s) 358, 1239
Bst4CI ACNGT 4 cut(s) 169, 767, 1163, 1350
Bst6I CTCTTC 2 cut(s) 1085, 1125
BstACI GRCGYC 1 cut(s) 1214
BstAFI CTTAAG 1 cut(s) 673
BstC8I GCNNGC 6 cut(s) 57, 310, 354, 496, 1060, 1313
BstDEI CTNAG 6 cut(s) 50, 575, 719, 724, 866, 987
BstDSI CCRYGG 2 cut(s) 606, 1136
BstF5I GGATG 4 cut(s) 275, 553, 976, 1093
BstFNI CGCG 2 cut(s) 665, 845
BstKTI GATC 3 cut(s) 421, 862, 948
BstMAI GTCTC 5 cut(s) 138, 399, 520, 1072, 1122
BstMBI GATC 3 cut(s) 418, 859, 945
BstMCI CGRYCG 2 cut(s) 646, 766
BstMWI GCNNNNNNNGC 6 cut(s) 10, 61, 500, 842, 1041, 1103
BstNI CCWGG 2 cut(s) 358, 1239
BstSCI CCNGG 3 cut(s) 356, 645, 1237
BstSFI CTRYAG 2 cut(s) 168, 1365
BstSLI GKGCMC 1 cut(s) 46
BstUI CGCG 2 cut(s) 665, 845
BstV1I GCAGC 8 cut(s) 76, 137, 333, 715, 715, 762, 1204, 1343
BstV2I GAAGAC 2 cut(s) 199, 229
BstXI CCANNNNNNTGG 1 cut(s) 607
BsuI GTATCC 2 cut(s) 25, 93
BsuRI GGCC 6 cut(s) 44, 55, 611, 923, 1247, 1311
BtgI CCRYGG 2 cut(s) 606, 1136
BtgZI GCGATG 1 cut(s) 586
BtsCI GGATG 4 cut(s) 275, 553, 976, 1093
BtsI GCAGTG 2 cut(s) 298, 1176
BtsIMutI CAGTG 3 cut(s) 298, 1001, 1176
Cac8I GCNNGC 6 cut(s) 57, 310, 354, 496, 1060, 1313
CaiI CAGNNNCTG 1 cut(s) 1047
Cfr13I GGNCC 5 cut(s) 42, 43, 360, 1310, 1343
CseI GACGC 1 cut(s) 1203
Csp6I GTAC 2 cut(s) 115, 1159
CviAII CATG 5 cut(s) 607, 941, 1137, 1319, 1324
CviQI GTAC 2 cut(s) 115, 1159
DdeI CTNAG 6 cut(s) 50, 575, 719, 724, 866, 987
DpnI GATC 3 cut(s) 420, 861, 947
DpnII GATC 3 cut(s) 418, 859, 945
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 2 cut(s) 609, 1245
Eam1104I CTCTTC 2 cut(s) 1085, 1125
EarI CTCTTC 2 cut(s) 1085, 1125
EciI GGCGGA 1 cut(s) 275
Eco130I CCWWGG 3 cut(s) 606, 820, 1136
Eco24I GRGCYC 2 cut(s) 46, 322
Eco47I GGWCC 2 cut(s) 360, 1343
Eco57I CTGAAG 2 cut(s) 812, 977
Eco88I CYCGRG 2 cut(s) 315, 1069
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 356, 1237
EcoT14I CCWWGG 3 cut(s) 606, 820, 1136
EcoT38I GRGCYC 2 cut(s) 46, 322
ErhI CCWWGG 3 cut(s) 606, 820, 1136
Esp3I CGTCTC 4 cut(s) 138, 399, 520, 1072
FaeI CATG 5 cut(s) 610, 944, 1140, 1322, 1327
FalI AAGNNNNNCTT 2 cut(s) 1271, 1303
FaqI GGGAC 3 cut(s) 346, 553, 1222
FatI CATG 5 cut(s) 606, 940, 1136, 1318, 1323
FauI CCCGC 2 cut(s) 1090, 1320
FblI GTMKAC 1 cut(s) 1020
FokI GGATG 4 cut(s) 262, 560, 983, 1100
FriOI GRGCYC 2 cut(s) 46, 322
FspBI CTAG 2 cut(s) 227, 1196
GsaI CCCAGC 3 cut(s) 49, 64, 1256
HaeIII GGCC 6 cut(s) 44, 55, 611, 923, 1247, 1311
HapII CCGG 1 cut(s) 646
HgaI GACGC 1 cut(s) 1203
Hin1I GRCGYC 1 cut(s) 1214
Hin1II CATG 5 cut(s) 610, 944, 1140, 1322, 1327
HincII GTYRAC 2 cut(s) 9, 183
HindII GTYRAC 2 cut(s) 9, 183
HinfI GANTC 4 cut(s) 368, 562, 815, 1077
HpaII CCGG 1 cut(s) 646
HphI GGTGA 2 cut(s) 1139, 1175
Hpy166II GTNNAC 6 cut(s) 9, 183, 1021, 1076, 1346, 1372
Hpy188I TCNGA 9 cut(s) 95, 404, 425, 520, 625, 655, 810, 857, 977
Hpy188III TCNNGA 6 cut(s) 219, 335, 538, 559, 830, 1069
Hpy8I GTNNAC 6 cut(s) 9, 183, 1021, 1076, 1346, 1372
Hpy99I CGWCG 3 cut(s) 413, 560, 1233
HpyAV CCTTC 5 cut(s) 78, 742, 793, 994, 1294
HpyCH4III ACNGT 4 cut(s) 169, 767, 1163, 1350
HpyCH4IV ACGT 1 cut(s) 1065
HpyCH4V TGCA 4 cut(s) 396, 498, 1062, 1169
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 61, 500, 842, 1041, 1103
HpyF3I CTNAG 6 cut(s) 50, 575, 719, 724, 866, 987
HpySE526I ACGT 1 cut(s) 1065
Hsp92I GRCGYC 1 cut(s) 1214
Hsp92II CATG 5 cut(s) 610, 944, 1140, 1322, 1327
Kzo9I GATC 3 cut(s) 418, 859, 945
LguI GCTCTTC 1 cut(s) 1125
LmnI GCTCC 3 cut(s) 259, 471, 758
Lsp1109I GCAGC 8 cut(s) 76, 137, 333, 715, 715, 762, 1204, 1343
LweI GCATC 2 cut(s) 916, 1156
MaeI CTAG 2 cut(s) 227, 1196
MaeII ACGT 1 cut(s) 1065
MalI GATC 3 cut(s) 420, 861, 947
MbiI CCGCTC 2 cut(s) 281, 352
MboI GATC 3 cut(s) 418, 859, 945
MboII GAAGA 5 cut(s) 204, 234, 692, 1072, 1142
MhlI GDGCHC 2 cut(s) 46, 322
MlsI TGGCCA 2 cut(s) 611, 1247
MluCI AATT 2 cut(s) 19, 1270
MluNI TGGCCA 2 cut(s) 611, 1247
MlyI GAGTC 2 cut(s) 362, 1071
MmeI TCCRAC 1 cut(s) 955
Mox20I TGGCCA 2 cut(s) 611, 1247
MroXI GAANNNNTTC 1 cut(s) 684
MscI TGGCCA 2 cut(s) 611, 1247
MseI TTAA 4 cut(s) 18, 83, 674, 1025
MslI CAYNNNNRTG 1 cut(s) 605
Msp20I TGGCCA 2 cut(s) 611, 1247
MspA1I CMGCKG 1 cut(s) 728
MspCI CTTAAG 1 cut(s) 673
MspI CCGG 1 cut(s) 646
MspR9I CCNGG 3 cut(s) 358, 647, 1239
MvaI CCWGG 2 cut(s) 358, 1239
MvnI CGCG 2 cut(s) 665, 845
MwoI GCNNNNNNNGC 6 cut(s) 10, 61, 500, 842, 1041, 1103
NciI CCSGG 1 cut(s) 647
NcoI CCATGG 2 cut(s) 606, 1136
NdeII GATC 3 cut(s) 418, 859, 945
NlaIII CATG 5 cut(s) 610, 944, 1140, 1322, 1327
NlaIV GGNNCC 5 cut(s) 44, 362, 467, 635, 754
PaeR7I CTCGAG 1 cut(s) 1069
PciSI GCTCTTC 1 cut(s) 1125
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 2 cut(s) 562, 815
PflFI GACNNNGTC 3 cut(s) 554, 851, 1213
PflMI CCANNNNNTGG 1 cut(s) 1324
PleI GAGTC 2 cut(s) 362, 1071
PpsI GAGTC 2 cut(s) 362, 1071
Psp6I CCWGG 2 cut(s) 356, 1237
PspFI CCCAGC 3 cut(s) 45, 60, 1252
PspGI CCWGG 2 cut(s) 356, 1237
PspN4I GGNNCC 5 cut(s) 44, 362, 467, 635, 754
PspOMI GGGCCC 1 cut(s) 42
PspPI GGNCC 5 cut(s) 42, 43, 360, 1310, 1343
PstNI CAGNNNCTG 1 cut(s) 1047
PsyI GACNNNGTC 3 cut(s) 554, 851, 1213
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 2 cut(s) 116, 1160
RsaNI GTAC 2 cut(s) 115, 1159
RseI CAYNNNNRTG 1 cut(s) 605
SapI GCTCTTC 1 cut(s) 1125
SaqAI TTAA 4 cut(s) 18, 83, 674, 1025
Sau3AI GATC 3 cut(s) 418, 859, 945
Sau96I GGNCC 5 cut(s) 42, 43, 360, 1310, 1343
SchI GAGTC 2 cut(s) 362, 1071
ScrFI CCNGG 3 cut(s) 358, 647, 1239
SduI GDGCHC 2 cut(s) 46, 322
SfaNI GCATC 2 cut(s) 916, 1156
SfcI CTRYAG 2 cut(s) 168, 1365
Sfr274I CTCGAG 1 cut(s) 1069
SinI GGWCC 2 cut(s) 360, 1343
SlaI CTCGAG 1 cut(s) 1069
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 4 cut(s) 383, 673, 917, 1069
SmoI CTYRAG 4 cut(s) 383, 673, 917, 1069
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 2 cut(s) 19, 1270
SspMI CTAG 2 cut(s) 227, 1196
StyD4I CCNGG 3 cut(s) 356, 645, 1237
StyI CCWWGG 3 cut(s) 606, 820, 1136
TaaI ACNGT 4 cut(s) 169, 767, 1163, 1350
TaiI ACGT 1 cut(s) 1068
TaqI TCGA 4 cut(s) 159, 558, 762, 1070
TasI AATT 2 cut(s) 19, 1270
TauI GCSGC 3 cut(s) 291, 352, 986
TfiI GAWTC 2 cut(s) 562, 815
Tru1I TTAA 4 cut(s) 18, 83, 674, 1025
Tru9I TTAA 4 cut(s) 18, 83, 674, 1025
TscAI CASTG 3 cut(s) 298, 1001, 1176
TseI GCWGC 8 cut(s) 64, 150, 346, 703, 728, 775, 1192, 1331
TspGWI ACGGA 1 cut(s) 1207
TspRI CASTG 3 cut(s) 298, 1001, 1176
Tth111I GACNNNGTC 3 cut(s) 554, 851, 1213
Van91I CCANNNNNTGG 1 cut(s) 1324
Vha464I CTTAAG 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 360, 1343
XhoI CTCGAG 1 cut(s) 1069
XmiI GTMKAC 1 cut(s) 1020
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 2 cut(s) 227, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.