Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16824963 .. 16825529

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G212400.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTATAAGGATGGACAAAGCCCTATAAGAGTTACAACAGGAAAGAATTCCTATACTTGGACTAAAAATAAATTTGTACGGCCTTGTTATGTCAAACTTAGTGTTGTATGCATCTTGCATTGTAGAGAAATCCATGAAGCAAATGCTCGGCACGATGCAACGGGAAGGTTGATGATGTTCGATCCTGAGACAAAACAAGTGAGAGTCTTGTTAAGAGGGCTTTCTTTGGCATTTGGGACTGCTAGTATGGATGGCTCGTTTGTCTTGGTTTCTGAATACGCAGGCAAAAGGATCCAAAAGTCTTGGCTCACTGGGCCAAAGGCTAACACATCAGAAATTATTCTCGACTTTGGTCACCATCCCGTTGACATAAATCGAAGCGTATCGGGAGATTTTTGGGTGGCGGTGAACCGTGAAACTAGACTGATAAATCATAGGGGCAAGCTCATTGTGCCAAATGCACTTCTCATCGACTCAGATGGCGCTGTGCTTGATGAGATTATTCTTTTGGATCAATACGGCAATTTATCCATCACTCAAGTTGAAGAAGTTGCTGGGGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0009991 GO:0010033 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0016829 GO:0016840 GO:0016843 GO:0016844 GO:0030054 GO:0030312 GO:0031090 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051365 GO:0051716 GO:0055044 GO:0071496 GO:0071944 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00901 ko01100 ko01110 map00901 map01100 map01110

Pfam Domains

Protein Families

Str_synth

Protein Analysis

189

Amino Acids

20.97

Weight (kDa)

8.44

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	4 cut(s)	176, 286, 299, 519
AcsI	RAATTY	2 cut(s)	46, 71
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	545
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	4 cut(s)	176, 286, 299, 519
AoxI	GGCC	2 cut(s)	80, 314
ApoI	RAATTY	2 cut(s)	46, 71
Asp700I	GAANNNNTTC	2 cut(s)	46, 339
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	347, 418
BaeGI	GKGCMC	1 cut(s)	562
BamHI	GGATCC	1 cut(s)	291
BccI	CCATC	5 cut(s)	5, 245, 366, 473, 539
BceAI	ACGGC	2 cut(s)	95, 535
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	3 cut(s)	243, 420, 565
BfoI	RGCGCY	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	120, 145
BmuI	ACTGGG	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	316
BseGI	GGATG	3 cut(s)	16, 256, 358
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	177, 489
BseNI	ACTGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	554
BshFI	GGCC	2 cut(s)	82, 316
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	82, 316
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	181, 291, 511
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	82, 316
BspCNI	CTCAG	2 cut(s)	178, 488
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	4 cut(s)	176, 286, 299, 519
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	3 cut(s)	181, 291, 511
Bst4CI	ACNGT	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	283, 443
BstDEI	CTNAG	3 cut(s)	98, 186, 475
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	16, 256, 358
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	3 cut(s)	184, 294, 514
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	181, 291, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 451
BstPAI	GACNNNNGTC	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	82, 316
BtsCI	GGATG	3 cut(s)	16, 256, 358
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	283, 443
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	8 cut(s)	21, 82, 220, 255, 307, 316, 323, 445
CviKI_1	RGCY	8 cut(s)	21, 82, 220, 255, 307, 316, 323, 445
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	98, 186, 475
DpnI	GATC	3 cut(s)	183, 293, 513
DpnII	GATC	3 cut(s)	181, 291, 511
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	113
FaeI	CATG	1 cut(s)	137
FaiI	YATR	9 cut(s)	6, 26, 54, 90, 109, 135, 248, 371, 435
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	133
FokI	GGATG	3 cut(s)	23, 263, 345
FspBI	CTAG	3 cut(s)	243, 420, 565
GlaI	GCGC	1 cut(s)	484
GsaI	CCCAGC	1 cut(s)	558
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	82, 316
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	204, 473
HphI	GGTGA	2 cut(s)	347, 418
Hpy166II	GTNNAC	2 cut(s)	367, 409
Hpy188I	TCNGA	3 cut(s)	274, 334, 478
Hpy188III	TCNNGA	3 cut(s)	185, 344, 387
Hpy8I	GTNNAC	2 cut(s)	367, 409
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	111, 118, 158, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 451
HpyF3I	CTNAG	3 cut(s)	98, 186, 475
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	483
Kzo9I	GATC	3 cut(s)	181, 291, 511
LpnPI	CCDG	5 cut(s)	24, 198, 267, 297, 540
LweI	GCATC	2 cut(s)	120, 145
MaeI	CTAG	3 cut(s)	243, 420, 565
MaeIII	GTNAC	2 cut(s)	31, 353
MalI	GATC	3 cut(s)	183, 293, 513
MboI	GATC	3 cut(s)	181, 291, 511
MboII	GAAGA	1 cut(s)	557
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	4 cut(s)	46, 71, 336, 523
MlyI	GAGTC	2 cut(s)	213, 467
MnlI	CCTC	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	46, 339
MseI	TTAA	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	313, 451
NdeII	GATC	3 cut(s)	181, 291, 511
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	353
NsiI	ATGCAT	1 cut(s)	113
PdmI	GAANNNNTTC	2 cut(s)	46, 339
PleI	GAGTC	2 cut(s)	212, 467
PpsI	GAGTC	2 cut(s)	212, 467
PshAI	GACNNNNGTC	1 cut(s)	351
PspEI	GGTNACC	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	181, 291, 511
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	2 cut(s)	213, 467
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	2 cut(s)	170, 447
SfaNI	GCATC	2 cut(s)	120, 145
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	4 cut(s)	46, 71, 336, 523
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	3 cut(s)	243, 420, 565
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	4 cut(s)	180, 345, 376, 471
TasI	AATT	4 cut(s)	46, 71, 336, 523
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	2 cut(s)	46, 71
XmnI	GAANNNNTTC	2 cut(s)	46, 339
XspI	CTAG	3 cut(s)	243, 420, 565
Zsp2I	ATGCAT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.