Prupe.5G213200_v2.0.a1

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
16859722 .. 16860923
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G213200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 366 bp
ATGAAGAAGGCATTGGGTCTCAAATCGCCGGGTTCGGGCTCCAAGAAGAGTCTTGGGTCCGGTGGGTTCGGGTCGGGACCTGGAAAGCCCAAGCGGGTTATGACGGTGGGTGAGCTAATGAGGATCCAAATGGGGATTTCTGACGCCATGGACTCTAGAGTCAGGAGAGCATGCTTAGGATTTCTGCTGCTCAGTGAGTTCTGCAGCATGGTAAGGAAGATTTTTATCTATACAGTAGAGGAAGTCAAGAGGTTGTCACCCAAGATAAAACTTACACTCAATGAAGAGGTCAAACCAGGAAAGCCAGATTCTGAAGCAGCAGTCAACACAGAAGACCAGTCATCCATTGTGGGAGCTGCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

122

Amino Acids

12.98

Weight (kDa)

9.73

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AciI CCGC 1 cut(s) 94
AclWI GGATC 2 cut(s) 118, 131
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 35
AjnI CCWGG 2 cut(s) 79, 295
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 115, 356
AluI AGCT 2 cut(s) 115, 356
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 118, 131
AlwNI CAGNNNCTG 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 187, 204, 317, 356
AspS9I GGNCC 2 cut(s) 57, 77
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 122, 249
AvaII GGWCC 2 cut(s) 57, 77
BamHI GGATCC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 4 cut(s) 174, 216, 329, 343
BciT130I CCWGG 2 cut(s) 81, 297
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 4 cut(s) 188, 205, 318, 357
BlsI GCNGC 4 cut(s) 189, 206, 319, 358
Bme1390I CCNGG 3 cut(s) 30, 81, 297
Bme18I GGWCC 2 cut(s) 57, 77
BmgT120I GGNCC 2 cut(s) 57, 77
BmiI GGNNCC 4 cut(s) 40, 58, 78, 125
BmrFI CCNGG 3 cut(s) 30, 81, 297
BpiI GAAGAC 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 224
BseBI CCWGG 2 cut(s) 81, 297
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 341
BseJI GATNNNNATC 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 337
BseXI GCAGC 4 cut(s) 174, 216, 329, 343
BsiSI CCGG 2 cut(s) 29, 60
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 4 cut(s) 40, 58, 78, 125
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 2 cut(s) 118, 131
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 81, 297
Bst4CI ACNGT 2 cut(s) 106, 235
Bst6I CTCTTC 2 cut(s) 41, 279
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 175, 191
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 341
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 123
BstNI CCWGG 2 cut(s) 81, 297
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 3 cut(s) 28, 79, 295
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 4 cut(s) 174, 216, 329, 343
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 57, 77
CseI GACGC 1 cut(s) 152
CviAII CATG 3 cut(s) 148, 171, 208
CviJI RGCY 5 cut(s) 39, 88, 115, 304, 356
CviKI_1 RGCY 5 cut(s) 39, 88, 115, 304, 356
DdeI CTNAG 2 cut(s) 175, 191
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 2 cut(s) 41, 279
EarI CTCTTC 2 cut(s) 41, 279
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 57, 77
Eco57I CTGAAG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 79, 295
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 151, 174, 211
FaiI YATR 6 cut(s) 101, 149, 172, 209, 231, 361
FaqI GGGAC 1 cut(s) 90
FatI CATG 3 cut(s) 147, 170, 207
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 4 cut(s) 188, 205, 318, 357
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 4 cut(s) 188, 205, 318, 357
FspBI CTAG 1 cut(s) 156
GluI GCNGC 4 cut(s) 188, 205, 318, 357
HapII CCGG 2 cut(s) 29, 60
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 3 cut(s) 151, 174, 211
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 4 cut(s) 49, 152, 159, 308
HpaII CCGG 2 cut(s) 29, 60
HphI GGTGA 2 cut(s) 122, 249
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 142, 313
Hpy188III TCNNGA 4 cut(s) 75, 156, 163, 247
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 106, 235
HpyCH4V TGCA 2 cut(s) 204, 359
HpyF3I CTNAG 2 cut(s) 175, 191
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 3 cut(s) 151, 174, 211
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 44, 353
LpnPI CCDG 9 cut(s) 42, 66, 73, 93, 148, 282, 309, 318, 350
Lsp1109I GCAGC 4 cut(s) 174, 216, 329, 343
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 255
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 5 cut(s) 16, 58, 229, 296, 344
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 41
MlyI GAGTC 3 cut(s) 58, 146, 168
MnlI CCTC 4 cut(s) 114, 232, 243, 280
MspI CCGG 2 cut(s) 29, 60
MspR9I CCNGG 3 cut(s) 30, 81, 297
MvaI CCWGG 2 cut(s) 81, 297
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 123
NlaIII CATG 3 cut(s) 151, 174, 211
NlaIV GGNNCC 4 cut(s) 40, 58, 78, 125
NmuCI GTSAC 1 cut(s) 255
NspI RCATGY 1 cut(s) 174
PaeI GCATGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 4 cut(s) 189, 206, 319, 358
PleI GAGTC 3 cut(s) 57, 146, 167
PpsI GAGTC 3 cut(s) 57, 146, 167
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 79, 295
PspGI CCWGG 2 cut(s) 79, 295
PspN4I GGNNCC 4 cut(s) 40, 58, 78, 125
PspPI GGNCC 2 cut(s) 57, 77
PspPPI RGGWCCY 1 cut(s) 77
PstI CTGCAG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 123
SatI GCNGC 4 cut(s) 188, 205, 318, 357
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 2 cut(s) 57, 77
SchI GAGTC 3 cut(s) 58, 146, 168
ScrFI CCNGG 3 cut(s) 30, 81, 297
SduI GDGCHC 1 cut(s) 41
SetI ASST 5 cut(s) 82, 117, 254, 291, 358
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 57, 77
SphI GCATGC 1 cut(s) 174
SsiI CCGC 1 cut(s) 94
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 28, 79, 295
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 106, 235
TfiI GAWTC 1 cut(s) 308
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 4 cut(s) 187, 204, 317, 356
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 2 cut(s) 17, 297
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 2 cut(s) 57, 77
XbaI TCTAGA 1 cut(s) 155
XceI RCATGY 1 cut(s) 174
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.