Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16927671 .. 16930102

Gene Structure 2432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G215100.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCTAGGTTAGGTTTATGTCGACAAATATTTGCCGGATTAGACCTCTCCCGACGACATTTTTTAGTTTGTGCACGTCTAATTTTGCAATTATTTACCTCTCTCTCAGGTACTATAGGTCATGTGGCTCATGGAAATGTCTTGTATAAATTAAAAACAATGATCCTGATTCCTGATGTTCGTTTTAAAAATGAGCTGGAGCACAACATTACTATGAAACTTGGATATGCAAATGCAAAAATATACAAGGCATATGGAAGTGGAATGGAAGACAATCCTCTCTGTGATGTTCCTGGATTTGAGAACTGCAAGATGAAACTGTTGAGACACATATCTTTCGTAGATTGTCCGGGTCACGATATTCTTATGGCTACTAATGGTGCTGCCATTATGGATGGAGCATTACTTCTCATAGCTGCTAATGAAAGTTGTCCCCAAACCACAAACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

151

Amino Acids

16.56

Weight (kDa)

8.5

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	157
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	196, 416
AluI	AGCT	2 cut(s)	196, 416
Alw21I	GWGCWC	2 cut(s)	76, 204
Alw26I	GTCTC	1 cut(s)	319
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	383, 416
AspA2I	CCTAGG	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	351
AvrII	CCTAGG	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	2 cut(s)	76, 204
BbvI	GCAGC	2 cut(s)	370, 403
BccI	CCATC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	384, 417
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	385, 418
Bme1390I	CCNGG	2 cut(s)	294, 351
BmgBI	CACGTC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	294, 351
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	370, 403
BsiHKAI	GWGCWC	2 cut(s)	76, 204
BsiSI	CCGG	2 cut(s)	36, 350
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	417
Bsp1286I	GDGCHC	2 cut(s)	76, 204
Bsp143I	GATC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	119
BspPI	GGATC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	106
BstENI	CCTNNNNNAGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	292, 349
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	370, 403
BstV2I	GAAGAC	1 cut(s)	276
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	2 cut(s)	122, 131
CviJI	RGCY	4 cut(s)	128, 196, 371, 416
CviKI_1	RGCY	4 cut(s)	128, 196, 371, 416
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DraI	TTTAAA	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	5
EcoNI	CCTNNNNNAGG	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	2 cut(s)	125, 134
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	2 cut(s)	121, 130
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	384, 417
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	384, 417
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	384, 417
GsuI	CTGGAG	1 cut(s)	218
HapII	CCGG	2 cut(s)	36, 350
Hin1II	CATG	2 cut(s)	125, 134
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	36, 350
Hpy166II	GTNNAC	2 cut(s)	23, 74
Hpy188III	TCNNGA	4 cut(s)	51, 166, 173, 356
Hpy8I	GTNNAC	2 cut(s)	23, 74
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	74, 88, 230, 236, 309
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	125, 134
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	199, 398
LpnPI	CCDG	8 cut(s)	49, 93, 179, 182, 186, 279, 306, 363
Lsp1109I	GCAGC	2 cut(s)	370, 403
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	76, 204
MluCI	AATT	3 cut(s)	81, 89, 149
MnlI	CCTC	3 cut(s)	56, 109, 288
MseI	TTAA	2 cut(s)	152, 186
MslI	CAYNNNNRTG	2 cut(s)	135, 212
MspI	CCGG	2 cut(s)	36, 350
MspR9I	CCNGG	2 cut(s)	294, 351
MvaI	CCWGG	1 cut(s)	294
NciI	CCSGG	1 cut(s)	351
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	2 cut(s)	125, 134
NmuCI	GTSAC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	385, 418
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	135, 212
SalI	GTCGAC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	152, 186
SatI	GCNGC	2 cut(s)	384, 417
Sau3AI	GATC	1 cut(s)	162
ScrFI	CCNGG	2 cut(s)	294, 351
SduI	GDGCHC	2 cut(s)	76, 204
SetI	ASST	9 cut(s)	11, 16, 48, 79, 101, 112, 121, 198, 418
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	135, 212
Sse9I	AATT	3 cut(s)	81, 89, 149
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	292, 349
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	22
TasI	AATT	3 cut(s)	81, 89, 149
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	152, 186
Tru9I	TTAA	2 cut(s)	152, 186
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	383, 416
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	230, 329, 438
VneI	GTGCAC	1 cut(s)	72
XagI	CCTNNNNNAGG	1 cut(s)	9
XmaJI	CCTAGG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.