Prupe.5G224600_v2.0.a1

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
17394987 .. 17395946
960 bp
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UTR
Exon/CDS
Intron
Prupe.5G224600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 345 bp
ATGACGGTGATATGGTTTATTTTCGGGGTAGTCGAGTACAACTGGGTGATCCTCCTCTACCACCTCTCCATTACCACACTGCTCATAATCTTCATATTACAATTTGTCAAAAATTTTTTGGAGGTTATCTTCATATCGGCGATTATTCCATCCTTTCGAAATAACGCAATTATTTTTCTCTATATGTTGCCTGTGATTGGAACCTATCTCAGCTCTCTGAATCTTCTGTACTTGGGGTTCATCTACTTGGGAATACTACTGCCACTTCTGTTTGAGCGATTTGAGGATGACGTTACTCGCCTTGGTATCAAAATTGCCCAAGAGTCGTTTGCCTTGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.27

Weight (kDa)

5.09

Isoelectric Point (pI)

27.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 2 cut(s) 38, 230
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AlwI GGATC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 19, 58
AsuII TTCGAA 1 cut(s) 157
BccI CCATC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 202
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 2 cut(s) 149, 292
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 197
Bsp119I TTCGAA 1 cut(s) 157
Bsp143I GATC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 157
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 149, 292
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 149, 292
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Csp6I GTAC 2 cut(s) 37, 229
CviAII CATG 1 cut(s) 342
CviJI RGCY 1 cut(s) 213
CviKI_1 RGCY 1 cut(s) 213
CviQI GTAC 2 cut(s) 37, 229
DdeI CTNAG 1 cut(s) 209
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 345
FaiI YATR 7 cut(s) 13, 86, 95, 134, 183, 185, 343
FatI CATG 1 cut(s) 341
FokI GGATG 2 cut(s) 136, 299
Hin1II CATG 1 cut(s) 345
HinfI GANTC 2 cut(s) 220, 323
HphI GGTGA 2 cut(s) 19, 58
Hpy188I TCNGA 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 345
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 28, 204
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 3 cut(s) 82, 121, 215
MluCI AATT 4 cut(s) 101, 112, 168, 312
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 5 cut(s) 62, 65, 74, 115, 277
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 202
NspV TTCGAA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 1 cut(s) 220
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
RsaI GTAC 2 cut(s) 38, 230
RsaNI GTAC 2 cut(s) 37, 229
Sau3AI GATC 1 cut(s) 48
SchI GAGTC 1 cut(s) 332
SetI ASST 5 cut(s) 66, 126, 206, 215, 294
SfuI TTCGAA 1 cut(s) 157
SgeI CNNG 9 cut(s) 37, 46, 55, 203, 244, 259, 309, 314, 332
Sse9I AATT 4 cut(s) 101, 112, 168, 312
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 33, 157
TasI AATT 4 cut(s) 101, 112, 168, 312
TatI WGTACW 2 cut(s) 36, 228
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 3 cut(s) 82, 121, 229
TspRI CASTG 1 cut(s) 84
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.