Prupe.5G226300_v2.0.a1

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Forward (+)
17443831 .. 17445975
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G226300.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 570 bp
ATGGAATATTCCTCCAAAGTATTTGTCCTACTTTTTCTTGGCATCCAAGTCGTTTTGGTAACTTGTATTCAATTTGAAGTTGGAGACAAGACCTATGGATGGGAGGTCCCCAAAACAGAATACTACCAACAATTAGTGTACAACGAATGGGCCTCAAAGAAAAGGTTCAATGTTGACGACACTCTCTATTTCGGTTACGATGCATTTGCAGACTCAGTGTTGGTAGTGAGCAAGGAAGATTACGAAAAGTGCCATTCGGATCGCCCCATTTACTACTCAAACGATGGTCACACAGTGGTGACATTGGACCGACCCGGTCTGTTCTATTTCATGAGTGGGGTTGCTGAACACTGCGAGAAAGGGCAGAAGATGGTCGTCAAAGTCTTGGAACCAGCTGGGGTTGAAACCCCACCTGCTGATGCTGATCAATCTGAAAACCAGAATTCATCTGAGTCATTACCACAACACAAGAATAATAACAATAATACCACTGGTGCACTTGCTGCCATTTCTTCTACAACTATTATCTTCTGCATCATGACCTCTCTCCTTGGTCTCTTTTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

190

Amino Acids

21.34

Weight (kDa)

4.75

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 421
Acc36I ACCTGC 1 cut(s) 421
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 442
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 4 cut(s) 71, 77, 169, 404
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 78, 560
Alw44I GTGCAC 1 cut(s) 495
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 495
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 1 cut(s) 442
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
Asp700I GAANNNNTTC 1 cut(s) 164
AspS9I GGNCC 3 cut(s) 106, 150, 307
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 2 cut(s) 106, 307
BaeGI GKGCMC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 490
BccI CCATC 3 cut(s) 93, 278, 364
BcgI CGANNNNNNTGC 4 cut(s) 31, 65, 188, 222
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 78, 560
BfuAI ACCTGC 1 cut(s) 421
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 106, 307
BmgT120I GGNCC 3 cut(s) 106, 150, 307
BmiI GGNNCC 2 cut(s) 108, 390
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 4 cut(s) 51, 190, 409, 543
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 550
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse1I ACTGG 1 cut(s) 496
Bse8I GATNNNNATC 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 550
BseGI GGATG 2 cut(s) 42, 104
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 228, 441
BseNI ACTGG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 1 cut(s) 490
BseYI CCCAGC 1 cut(s) 395
BshFI GGCC 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 499
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 2 cut(s) 78, 560
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 499
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 2 cut(s) 259, 424
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 227, 442
BspHI TCATGA 2 cut(s) 330, 537
BspLI GGNNCC 2 cut(s) 108, 390
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 550
BssMI GATC 2 cut(s) 259, 424
BssT1I CCWWGG 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 214, 450
BstF5I GGATG 2 cut(s) 42, 104
BstKTI GATC 2 cut(s) 262, 427
BstMAI GTCTC 2 cut(s) 78, 560
BstMBI GATC 2 cut(s) 259, 424
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 1 cut(s) 499
BstV1I GCAGC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 2 cut(s) 42, 104
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 4 cut(s) 222, 300, 349, 489
BveI ACCTGC 1 cut(s) 421
CciI TCATGA 2 cut(s) 330, 537
Cfr13I GGNCC 3 cut(s) 106, 150, 307
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 331, 538
CviJI RGCY 2 cut(s) 152, 395
CviKI_1 RGCY 2 cut(s) 152, 395
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 214, 450
DpnI GATC 2 cut(s) 261, 426
DpnII GATC 2 cut(s) 259, 424
DraIII CACNNNGTG 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 106, 307
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 550
EcoT22I ATGCAT 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 2 cut(s) 334, 541
FaiI YATR 3 cut(s) 96, 332, 539
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 330, 537
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 2 cut(s) 29, 111
Fsp4HI GCNGC 1 cut(s) 504
GluI GCNGC 1 cut(s) 504
GsaI CCCAGC 1 cut(s) 399
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 315
Hin1II CATG 2 cut(s) 334, 541
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 2 cut(s) 212, 452
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 139, 175, 497
Hpy188I TCNGA 3 cut(s) 259, 433, 451
Hpy188III TCNNGA 2 cut(s) 331, 538
Hpy8I GTNNAC 3 cut(s) 139, 175, 497
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 4 cut(s) 203, 209, 497, 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 2 cut(s) 214, 450
Hsp92II CATG 2 cut(s) 334, 541
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 259, 424
LpnPI CCDG 6 cut(s) 328, 381, 405, 426, 452, 477
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 4 cut(s) 51, 190, 409, 543
MaeIII GTNAC 4 cut(s) 58, 194, 287, 298
MalI GATC 2 cut(s) 261, 426
MboI GATC 2 cut(s) 259, 424
MboII GAAGA 5 cut(s) 248, 379, 504, 520, 556
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 3 cut(s) 71, 131, 442
MlyI GAGTC 2 cut(s) 206, 461
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 4 cut(s) 22, 97, 163, 553
Mph1103I ATGCAT 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 503
NciI CCSGG 1 cut(s) 315
NdeII GATC 2 cut(s) 259, 424
NlaIII CATG 2 cut(s) 334, 541
NlaIV GGNNCC 2 cut(s) 108, 390
NmuCI GTSAC 2 cut(s) 287, 298
NsiI ATGCAT 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 296
PagI TCATGA 2 cut(s) 330, 537
PaqCI CACCTGC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 2 cut(s) 206, 460
PpsI GAGTC 2 cut(s) 206, 460
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 108, 390
PspPI GGNCC 3 cut(s) 106, 150, 307
PspPPI RGGWCCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 296
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 2 cut(s) 259, 424
Sau96I GGNCC 3 cut(s) 106, 150, 307
SchI GAGTC 2 cut(s) 206, 461
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 499
SetI ASST 6 cut(s) 95, 108, 167, 397, 415, 545
SfaNI GCATC 4 cut(s) 51, 190, 409, 543
SinI GGWCC 2 cut(s) 106, 307
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 3 cut(s) 71, 131, 442
SspI AATATT 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 295
TaqII GACCGA 1 cut(s) 324
TasI AATT 3 cut(s) 71, 131, 442
TatI WGTACW 1 cut(s) 138
TscAI CASTG 4 cut(s) 222, 300, 356, 496
TseFI GTSAC 2 cut(s) 287, 298
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 2 cut(s) 287, 298
TspDTI ATGAA 2 cut(s) 319, 435
TspRI CASTG 4 cut(s) 222, 300, 356, 496
Tth111I GACNNNGTC 1 cut(s) 315
VneI GTGCAC 1 cut(s) 495
VpaK11BI GGWCC 2 cut(s) 106, 307
XapI RAATTY 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.