Prupe.5G226400_v2.0.a1

Protein of unknown function, DUF599

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
N/A
Physical Location & Seq
Reverse (-)
17452589 .. 17454872
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G226400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 894 bp
ATGGAAGGGGATAGCTTAAGCTGGGACTATCTGCTGGTACCAGTGGGTCTGTGTGTGTTGGGAATATACCACATTTGGCTACTCATCACAGTTCAACGAAATCCCACAAAAACTGTGATGGGCCTCAATTCTGCGGTTCGCAAACAATGGGTCTTCTCCATGATGGATGTTAGTCCCCCTTTCTCTTTCCTTTTATGTTTTCCTTCTGCAATTTACAGGCTTTCTTTTTTAGAAACCAAAACAAAAAAAAAAAAAAAGGTAGAGACTTTGGTAAGTAAAACTTTTGAGAAGGATAATGGTCAATGGGGGAGAAAAACCAATTGCATTTCCTTCATATATACAATGATCAGTGTGTTTGTGAGCACCAGCTCCAGCTCTAGCTGTGACAGCACTGTATCACAACAATTAGTTTATACCATCCCTCTTTCTTCAATCAAGTGCTTCTGCATTTTGCTCTGCTTTCTTGTTGGATTTCTCTGCAATGTGCAGTCTACTAGATACTTTGCCCATGCTAGCTTCTTGGCTACTCTGCCAACAGGGAAAGACAAAACGGATTACATTGAATATGTTTCGACAACTGTGAATCGAGGAAGTTACTTTTGGTCCCTTGGATTGCGAGCATTCTACCTCTCAATTCCTCTCTTTCTCTGGATCTTTGGGGCAATTCCCATGTTTGTTTGTTGCTGCATAATGACAATTGCTCTCATTATACAACCACCAGTTTTACACAACTTATTCACAGCCAATCCCTCAAAGAGGAAGGGAGAACCAATGATGTCGAATCAATTGGTCAATCGTCGGCAAATTCTGGTTTTGAGGACTTTCTCATTCGGCGTCCCCTACTTACGGATTATGACTCAGTTTCTGCCGCTAATGTTGCTAGATAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF599

Protein Analysis

298

Amino Acids

33.79

Weight (kDa)

9.38

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 37
AccI GTMKAC 1 cut(s) 491
AciI CCGC 2 cut(s) 134, 869
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 1 cut(s) 804
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 756, 846
AflII CTTAAG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 95, 432, 563
AjuI GAANNNNNNNTTGG 2 cut(s) 583, 615
AluBI AGCT 6 cut(s) 15, 21, 369, 375, 381, 516
AluI AGCT 6 cut(s) 15, 21, 369, 375, 381, 516
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 659
AlwNI CAGNNNCTG 1 cut(s) 865
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 684
ApoI RAATTY 1 cut(s) 804
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
Asp718I GGTACC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 121, 603
AsuNHI GCTAGC 1 cut(s) 512
AvaII GGWCC 1 cut(s) 603
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 671
BccI CCATC 3 cut(s) 112, 157, 425
BclI TGATCA 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 4 cut(s) 378, 495, 513, 881
BfrI CTTAAG 1 cut(s) 16
BisI GCNGC 2 cut(s) 685, 869
BlsI GCNGC 2 cut(s) 686, 870
Bme18I GGWCC 1 cut(s) 603
BmgT120I GGNCC 2 cut(s) 121, 603
BmiI GGNNCC 2 cut(s) 39, 605
BmtI GCTAGC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 355
BsaHI GRCGYC 1 cut(s) 834
BsaJI CCNNGG 1 cut(s) 607
Bsc4I CCNNNNNNNGG 2 cut(s) 756, 846
Bse1I ACTGG 2 cut(s) 41, 719
Bse3DI GCAATG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 607
BseGI GGATG 2 cut(s) 172, 417
BseLI CCNNNNNNNGG 2 cut(s) 756, 846
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 2 cut(s) 41, 719
BseXI GCAGC 1 cut(s) 671
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 365
BslFI GGGAC 4 cut(s) 38, 159, 589, 821
BslI CCNNNNNNNGG 2 cut(s) 756, 846
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 4 cut(s) 38, 159, 589, 821
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 365
Bsp143I GATC 2 cut(s) 345, 651
BspACI CCGC 2 cut(s) 134, 869
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 871
BspLI GGNNCC 2 cut(s) 39, 605
BspOI GCTAGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 2 cut(s) 41, 719
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 2 cut(s) 345, 651
BssNI GRCGYC 1 cut(s) 834
BssT1I CCWWGG 1 cut(s) 607
Bst4CI ACNGT 4 cut(s) 91, 115, 394, 580
BstACI GRCGYC 1 cut(s) 834
BstAFI CTTAAG 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 514, 618
BstDEI CTNAG 1 cut(s) 858
BstENI CCTNNNNNAGG 1 cut(s) 754
BstF5I GGATG 2 cut(s) 172, 417
BstKTI GATC 2 cut(s) 348, 654
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 345, 651
BstMWI GCNNNNNNNGC 2 cut(s) 387, 877
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 2 cut(s) 172, 417
BtsIMutI CAGTG 3 cut(s) 48, 355, 390
Cac8I GCNNGC 2 cut(s) 514, 618
CaiI CAGNNNCTG 1 cut(s) 865
Cfr13I GGNCC 2 cut(s) 121, 603
CseI GACGC 1 cut(s) 823
Csp6I GTAC 1 cut(s) 38
CviAII CATG 3 cut(s) 160, 509, 670
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 858
DpnI GATC 2 cut(s) 347, 653
DpnII GATC 2 cut(s) 345, 651
Eco130I CCWWGG 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 603
EcoNI CCTNNNNNAGG 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 3 cut(s) 163, 512, 673
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 4 cut(s) 38, 159, 589, 821
FatI CATG 3 cut(s) 159, 508, 669
FbaI TGATCA 1 cut(s) 345
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 2 cut(s) 685, 869
FokI GGATG 2 cut(s) 179, 404
Fsp4HI GCNGC 2 cut(s) 685, 869
FspBI CTAG 4 cut(s) 378, 495, 513, 881
GluI GCNGC 2 cut(s) 685, 869
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 1 cut(s) 123
HgaI GACGC 1 cut(s) 823
Hin1I GRCGYC 1 cut(s) 834
Hin1II CATG 3 cut(s) 163, 512, 673
HinfI GANTC 3 cut(s) 583, 781, 856
Hpy166II GTNNAC 1 cut(s) 492
Hpy188III TCNNGA 1 cut(s) 649
Hpy8I GTNNAC 1 cut(s) 492
Hpy99I CGWCG 1 cut(s) 801
HpyAV CCTTC 4 cut(s) 213, 283, 340, 754
HpyCH4III ACNGT 4 cut(s) 91, 115, 394, 580
HpyCH4V TGCA 6 cut(s) 209, 324, 447, 480, 487, 687
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 877
HpyF3I CTNAG 1 cut(s) 858
Hsp92I GRCGYC 1 cut(s) 834
Hsp92II CATG 3 cut(s) 163, 512, 673
KpnI GGTACC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 2 cut(s) 345, 651
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 1 cut(s) 671
MaeI CTAG 4 cut(s) 378, 495, 513, 881
MaeIII GTNAC 2 cut(s) 383, 593
MalI GATC 2 cut(s) 347, 653
MboI GATC 2 cut(s) 345, 651
MboII GAAGA 2 cut(s) 145, 420
MfeI CAATTG 3 cut(s) 319, 696, 785
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 9 cut(s) 127, 210, 319, 404, 633, 663, 696, 785, 804
MlyI GAGTC 1 cut(s) 850
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 8 cut(s) 134, 432, 581, 638, 648, 750, 760, 810
MseI TTAA 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 16
MunI CAATTG 3 cut(s) 319, 696, 785
Mva1269I GAATGC 1 cut(s) 620
MwoI GCNNNNNNNGC 2 cut(s) 387, 877
NdeII GATC 2 cut(s) 345, 651
NheI GCTAGC 1 cut(s) 512
NlaIII CATG 3 cut(s) 163, 512, 673
NlaIV GGNNCC 2 cut(s) 39, 605
NmuCI GTSAC 1 cut(s) 383
PctI GAATGC 1 cut(s) 620
PfeI GAWTC 2 cut(s) 583, 781
PkrI GCNGC 2 cut(s) 686, 870
PleI GAGTC 1 cut(s) 850
PpsI GAGTC 1 cut(s) 850
PspFI CCCAGC 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 39, 605
PspPI GGNCC 2 cut(s) 121, 603
PstNI CAGNNNCTG 1 cut(s) 865
PsuI RGATCY 1 cut(s) 651
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 2 cut(s) 685, 869
Sau3AI GATC 2 cut(s) 345, 651
Sau96I GGNCC 2 cut(s) 121, 603
SchI GAGTC 1 cut(s) 850
SduI GDGCHC 1 cut(s) 365
SetI ASST 8 cut(s) 17, 23, 261, 371, 377, 383, 518, 630
SinI GGWCC 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 9 cut(s) 127, 210, 319, 404, 633, 663, 696, 785, 804
SsiI CCGC 2 cut(s) 134, 869
SspMI CTAG 4 cut(s) 378, 495, 513, 881
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 4 cut(s) 91, 115, 394, 580
TaqI TCGA 3 cut(s) 572, 586, 779
TasI AATT 9 cut(s) 127, 210, 319, 404, 633, 663, 696, 785, 804
TauI GCSGC 1 cut(s) 871
TfiI GAWTC 2 cut(s) 583, 781
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 3 cut(s) 48, 355, 397
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 684
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 322
TspGWI ACGGA 2 cut(s) 566, 862
TspRI CASTG 3 cut(s) 48, 355, 397
Vha464I CTTAAG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 603
XagI CCTNNNNNAGG 1 cut(s) 754
XapI RAATTY 1 cut(s) 804
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 4 cut(s) 378, 495, 513, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.