Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17639395 .. 17640522

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G231200.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCCAATCGACCAACAAGTTTTATTATTATTTAAATTTATTTATTTTACGGATCTAGCATCATTTGCAGATGAGTATAGAAAATTGGCAATTGACTGCCTCAAGGTTTTACGTGTTGAGATGCAATTGGAGACAATTTTCCATATGCAGATTGCACGCAAAGATGAGGAAATGGCACCTTTTGTTGCAGGAGTGAAGCGGATTAACATATTTGGTGGAATTTGTAGCATTGTAGCAAATGCATCCATCAAGGTTATACCTTCTATAGAATCTTTTGTAGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006887 GO:0006892 GO:0006893 GO:0006903 GO:0007154 GO:0007275 GO:0008037 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009791 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0022414 GO:0030054 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043230 GO:0044237 GO:0044249 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048316 GO:0048354 GO:0048359 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055044 GO:0060321 GO:0061458 GO:0070062 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec8_exocyst

Protein Analysis

96

Amino Acids

10.74

Weight (kDa)

5.73

Isoelectric Point (pI)

33.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	35, 219
AflIII	ACRYGT	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	60
ApoI	RAATTY	2 cut(s)	35, 219
BanI	GGYRCC	1 cut(s)	175
BccI	CCATC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	3 cut(s)	68, 111, 251
BpuEI	CTTGAG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	113
BseGI	GGATG	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	52, 281
BspACI	CCGC	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	175
BssMI	GATC	2 cut(s)	52, 281
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	242
BstKTI	GATC	2 cut(s)	55, 284
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	52, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	157
CciI	TCATGA	1 cut(s)	284
CviAII	CATG	1 cut(s)	285
DpnI	GATC	2 cut(s)	54, 283
DpnII	GATC	2 cut(s)	52, 281
DraI	TTTAAA	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	244
FaeI	CATG	1 cut(s)	288
FaiI	YATR	7 cut(s)	78, 144, 146, 209, 257, 266, 286
FatI	CATG	1 cut(s)	284
FauNDI	CATATG	1 cut(s)	144
FokI	GGATG	1 cut(s)	229
FspBI	CTAG	1 cut(s)	56
Hin1II	CATG	1 cut(s)	288
HinfI	GANTC	1 cut(s)	269
Hpy188III	TCNNGA	1 cut(s)	285
HpyAV	CCTTC	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	6 cut(s)	68, 124, 148, 155, 188, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	52, 281
LpnPI	CCDG	1 cut(s)	174
LweI	GCATC	3 cut(s)	68, 111, 251
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	112
MalI	GATC	2 cut(s)	54, 283
MboI	GATC	2 cut(s)	52, 281
MfeI	CAATTG	2 cut(s)	90, 125
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	6 cut(s)	35, 83, 90, 125, 135, 219
MnlI	CCTC	2 cut(s)	110, 160
Mph1103I	ATGCAT	1 cut(s)	244
MseI	TTAA	2 cut(s)	33, 204
MunI	CAATTG	2 cut(s)	90, 125
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	2 cut(s)	52, 281
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	244
PagI	TCATGA	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	33, 204
Sau3AI	GATC	2 cut(s)	52, 281
SetI	ASST	5 cut(s)	108, 115, 181, 255, 262
SfaNI	GCATC	3 cut(s)	68, 111, 251
SfcI	CTRYAG	1 cut(s)	264
SgeI	CNNG	7 cut(s)	29, 68, 115, 125, 168, 201, 262
SmiI	ATTTAAAT	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	6 cut(s)	35, 83, 90, 125, 135, 219
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	56
SwaI	ATTTAAAT	1 cut(s)	34
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	9
TasI	AATT	6 cut(s)	35, 83, 90, 125, 135, 219
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	33, 204
Tru9I	TTAA	2 cut(s)	33, 204
TspGWI	ACGGA	1 cut(s)	65
XapI	RAATTY	2 cut(s)	35, 219
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.