Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

18039570 .. 18040342

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G238900.1_v2.0.a1.CDS.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCATCGAGGGCGAACCATCCGTGCCTCTGTTTCGAGGGAGAAAGAGATGTCATGTGGCCAATTGCCTTGTTGATATGCATTCCAAATCTGGAGAAAGAGATGTTACGGAATGCACGGTTATCAGAGACGAAGTCAGAGAATTATAGTTCATATACATTGCTTTCAAGCCTATATGCCAATGCCAGGCGCGCGTTGGAAAATAAGAGGCTCGGTTGCAGTTGGGTGCAAGGAAAGAAAGGAAATGCAGCCTTCTTTGTGGGTGATAGGACTCATCCAGAGTCTCAAGAAATTTATGAGACCCTTGCTGACTTGTTTAAACGGATCAAAGACATTTCGCACTTCACGATGTGCACCTATATCCGGATCACCAACAACTTACGTGTCTGTGGAGATTGCCACGGTGCGATTACCTACATATATACATCCAAGATTGTTGAGCACGAAATCATATTGAGAGACTTAAGTCGCTTTCATCATTTGAAGAACGGATCCTGCTCCTGGGGAGGCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

173

Amino Acids

19.86

Weight (kDa)

8.62

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	192, 194
AccIII	TCCGGA	1 cut(s)	363
AclWI	GGATC	4 cut(s)	332, 374, 486, 499
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	351
AfiI	CCNNNNNNNGG	3 cut(s)	186, 363, 501
AflII	CTTAAG	1 cut(s)	463
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	168, 484
AjnI	CCWGG	2 cut(s)	185, 500
Alw21I	GWGCWC	2 cut(s)	356, 444
Alw26I	GTCTC	4 cut(s)	122, 288, 293, 453
Alw44I	GTGCAC	1 cut(s)	352
AlwI	GGATC	4 cut(s)	332, 374, 486, 499
Aor13HI	TCCGGA	1 cut(s)	363
AoxI	GGCC	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	291
AspLEI	GCGC	2 cut(s)	192, 194
AsuHPI	GGTGA	2 cut(s)	275, 361
BaeGI	GKGCMC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	491
Bbv12I	GWGCWC	2 cut(s)	356, 444
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	187, 502
BcoDI	GTCTC	4 cut(s)	122, 288, 293, 453
BfrI	CTTAAG	1 cut(s)	463
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	187, 502
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	2 cut(s)	187, 502
BoxI	GACNNNNGTC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	400, 501
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 363, 501
Bse3DI	GCAATG	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	187, 502
BseDI	CCNNGG	2 cut(s)	400, 501
BseGI	GGATG	3 cut(s)	19, 274, 425
BseLI	CCNNNNNNNGG	3 cut(s)	186, 363, 501
BseMI	GCAATG	1 cut(s)	158
BsePI	GCGCGC	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	192, 194
BshFI	GGCC	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	356, 444
BsiSI	CCGG	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	186, 363, 501
BsmAI	GTCTC	4 cut(s)	122, 288, 293, 453
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	2 cut(s)	81, 118
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	356, 444
Bsp13I	TCCGGA	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	324, 366, 491
BspANI	GGCC	1 cut(s)	61
BspEI	TCCGGA	1 cut(s)	363
BspFNI	CGCG	2 cut(s)	192, 194
BspLI	GGNNCC	1 cut(s)	493
BspPI	GGATC	4 cut(s)	332, 374, 486, 499
BspTI	CTTAAG	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	400, 501
BssHII	GCGCGC	1 cut(s)	190
BssMI	GATC	3 cut(s)	324, 366, 491
Bst2UI	CCWGG	2 cut(s)	187, 502
Bst4CI	ACNGT	2 cut(s)	120, 404
BstAFI	CTTAAG	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	192
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	19, 274, 425
BstFNI	CGCG	2 cut(s)	192, 194
BstHHI	GCGC	2 cut(s)	192, 194
BstKTI	GATC	3 cut(s)	327, 369, 494
BstMAI	GTCTC	4 cut(s)	122, 288, 293, 453
BstMBI	GATC	3 cut(s)	324, 366, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	2 cut(s)	187, 502
BstPAI	GACNNNNGTC	1 cut(s)	465
BstSCI	CCNGG	2 cut(s)	185, 500
BstSLI	GKGCMC	1 cut(s)	356
BstUI	CGCG	2 cut(s)	192, 194
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	19, 274, 425
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	2 cut(s)	192, 194
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	5 cut(s)	61, 171, 211, 251, 510
CviKI_1	RGCY	5 cut(s)	61, 171, 211, 251, 510
DpnI	GATC	3 cut(s)	326, 368, 493
DpnII	GATC	3 cut(s)	324, 366, 491
DraI	TTTAAA	1 cut(s)	319
DraIII	CACNNNGTG	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	185, 500
EcoT22I	ATGCAT	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	1 cut(s)	58
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	3 cut(s)	6, 261, 412
Fsp4HI	GCNGC	1 cut(s)	249
GlaI	GCGC	2 cut(s)	191, 193
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	2 cut(s)	192, 194
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	2 cut(s)	190, 192
HinP1I	GCGC	2 cut(s)	190, 192
HinfI	GANTC	2 cut(s)	271, 281
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	2 cut(s)	275, 361
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	2 cut(s)	127, 139
Hpy188III	TCNNGA	5 cut(s)	92, 278, 287, 346, 364
Hpy8I	GTNNAC	1 cut(s)	354
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	120, 404
HpyCH4IV	ACGT	1 cut(s)	382
HpyCH4V	TGCA	6 cut(s)	81, 116, 219, 229, 248, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	2 cut(s)	190, 192
Kpn2I	TCCGGA	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	324, 366, 491
LmnI	GCTCC	1 cut(s)	503
LpnPI	CCDG	8 cut(s)	77, 172, 199, 291, 377, 487, 508, 514
Lsp1109I	GCAGC	1 cut(s)	260
MaeII	ACGT	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	3 cut(s)	326, 368, 493
MboI	GATC	3 cut(s)	324, 366, 491
MboII	GAAGA	1 cut(s)	496
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	2 cut(s)	356, 444
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	3 cut(s)	63, 142, 291
MluNI	TGGCCA	1 cut(s)	61
MlyI	GAGTC	2 cut(s)	265, 290
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	3, 31, 38, 201, 500
Mox20I	TGGCCA	1 cut(s)	61
Mph1103I	ATGCAT	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	61
MseI	TTAA	2 cut(s)	318, 464
Msp20I	TGGCCA	1 cut(s)	61
MspCI	CTTAAG	1 cut(s)	463
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	2 cut(s)	187, 502
MssI	GTTTAAAC	1 cut(s)	319
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	2 cut(s)	81, 118
MvaI	CCWGG	2 cut(s)	187, 502
MvnI	CGCG	2 cut(s)	192, 194
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	3 cut(s)	324, 366, 491
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	83
PauI	GCGCGC	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	2 cut(s)	81, 118
PflFI	GACNNNGTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	265, 289
PmeI	GTTTAAAC	1 cut(s)	319
PpsI	GAGTC	2 cut(s)	265, 289
Ppu21I	YACGTR	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	185, 500
PspGI	CCWGG	2 cut(s)	185, 500
PspN4I	GGNNCC	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	133
PteI	GCGCGC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	318, 464
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	324, 366, 491
SchI	GAGTC	2 cut(s)	265, 290
ScrFI	CCNGG	2 cut(s)	187, 502
SduI	GDGCHC	2 cut(s)	356, 444
SetI	ASST	3 cut(s)	359, 385, 416
SmlI	CTYRAG	2 cut(s)	285, 463
SmoI	CTYRAG	2 cut(s)	285, 463
Sse9I	AATT	3 cut(s)	63, 142, 291
StyD4I	CCNGG	2 cut(s)	185, 500
TaaI	ACNGT	2 cut(s)	120, 404
TaiI	ACGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	8, 36
TasI	AATT	3 cut(s)	63, 142, 291
Tru1I	TTAA	2 cut(s)	318, 464
Tru9I	TTAA	2 cut(s)	318, 464
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	141, 464
TspGWI	ACGGA	4 cut(s)	12, 124, 337, 504
Tth111I	GACNNNGTC	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.