Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

649987 .. 651268

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G007900.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAAAAGAATGCACAGAGTGGTCACAGGTTGGTCTTAGTCCCATGTCCATTCCAAGGCCACATATACCCTATGCTTAAGCTGTTTTTTGAACAATGCTTGATCGATAGAGTGATTGAACAAGAACCGCAGAACAAAATCATCTGCATCATCTATGATGGAATTATGTACTTCTCTGAATCTGTGGCAAATTATCTGAACATTCCAAGCATCCTCTTGCGCACACAAAGCGCTATCAATTTTATTGCTCTCAACCCCCTCCTACGACTTCATTCAAAAGGTCACACTCCATTCCGAGAATCTATGTCACTGAACCGGGTGCCCGAGCTTCATCCCCTCAGGATCTGCCCACCTCCATTTTCGAAACACTTGAAAAACTATTTGAAACTAGTTGCTAATTTACAAAAAGTTAGGACATCCTCAGCGGTCATTTGGAACACCATGGACTGCCTTGAACAATCATCACTGGCACGGATCCAGAAAGAATTTCAAGTTCCAATCTTCACCGTAGGTCCTCTTCACAAGATTGCAACAGCGGCCTCAAGTAGTTTACTAGAAGAAGACACAGGCTGCATTGTGTGGCTTGACAAGCAATCCCACAACTCAGTTATCTATAAAGAACTAGCCGAAATGGCTTGGGGCTTAGCTAACAGCAAGCAACCTTTCTTGTGGGTGATCAGGCCCGGATCAATTTGTGGTTCAGATTGGATTGAACTACTGCCTCAAGAATTCATAGAAGCTGTTGGAGAAAGAGGTTGCATTCTTAAATGGGCACCCCAGATGGATTTTGGGGCATTGTGGGAGCAAATTTCCCCACAAGAATATTCAGTTCGGAAAATTCTCCTTTCTTCTTCGCCGCCTCTTTCTCCCTGCAAAATAGAACAAATAAGAGGACCATACTCGGGGGGTGTTGGCCAAAAGCCCTCCGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

312

Amino Acids

35.12

Weight (kDa)

8.04

Isoelectric Point (pI)

60.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
AccB1I	GGYRCC	2 cut(s)	319, 772
AciI	CCGC	4 cut(s)	128, 425, 536, 857
AclWI	GGATC	4 cut(s)	350, 469, 482, 694
AcoI	YGGCCR	1 cut(s)	913
AcsI	RAATTY	4 cut(s)	485, 728, 807, 837
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	170
AfeI	AGCGCT	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	56, 902
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	8 cut(s)	92, 119, 276, 373, 385, 455, 491, 713
AhlI	ACTAGT	1 cut(s)	388
AluBI	AGCT	4 cut(s)	82, 328, 647, 740
AluI	AGCT	4 cut(s)	82, 328, 647, 740
AlwI	GGATC	4 cut(s)	350, 469, 482, 694
AlwNI	CAGNNNCTG	1 cut(s)	345
Ama87I	CYCGRG	2 cut(s)	323, 901
Aor51HI	AGCGCT	1 cut(s)	232
AoxI	GGCC	4 cut(s)	58, 537, 680, 913
ApeKI	GCWGC	1 cut(s)	570
ApoI	RAATTY	4 cut(s)	485, 728, 807, 837
AspLEI	GCGC	2 cut(s)	222, 233
AspS9I	GGNCC	3 cut(s)	512, 681, 893
AsuC2I	CCSGG	2 cut(s)	317, 684
AsuHPI	GGTGA	2 cut(s)	496, 685
AsuII	TTCGAA	1 cut(s)	362
AvaI	CYCGRG	2 cut(s)	323, 901
AvaII	GGWCC	2 cut(s)	512, 893
AxyI	CCTNAGG	1 cut(s)	338
BaeGI	GKGCMC	2 cut(s)	324, 775
BalI	TGGCCA	1 cut(s)	915
BamHI	GGATCC	1 cut(s)	474
BanI	GGYRCC	2 cut(s)	319, 772
BarI	GAAGNNNNNNTAC	2 cut(s)	501, 533
BbsI	GAAGAC	1 cut(s)	567
BbvCI	CCTCAGC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	557
BccI	CCATC	2 cut(s)	152, 775
BclI	TGATCA	1 cut(s)	675
BcnI	CCSGG	2 cut(s)	317, 684
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	3 cut(s)	389, 554, 623
BfoI	RGCGCY	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	77
BglI	GCCNNNNNGGC	1 cut(s)	632
BisI	GCNGC	3 cut(s)	537, 571, 857
BlpI	GCTNAGC	1 cut(s)	643
BlsI	GCNGC	3 cut(s)	538, 572, 858
Bme1390I	CCNGG	2 cut(s)	317, 684
Bme18I	GGWCC	2 cut(s)	512, 893
BmeT110I	CYCGRG	2 cut(s)	323, 901
BmgT120I	GGNCC	3 cut(s)	512, 681, 893
BmiI	GGNNCC	3 cut(s)	321, 476, 774
BmrFI	CCNGG	2 cut(s)	317, 684
BmsI	GCATC	3 cut(s)	156, 219, 919
BpiI	GAAGAC	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	421
Bpu1102I	GCTNAGC	1 cut(s)	643
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	526, 708
BpuMI	CCSGG	2 cut(s)	317, 684
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	55, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 902
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	55, 441
BseGI	GGATG	3 cut(s)	210, 331, 416
BseLI	CCNNNNNNNGG	2 cut(s)	56, 902
BseMII	CTCAG	3 cut(s)	352, 435, 618
BseNI	ACTGG	1 cut(s)	471
BseSI	GKGCMC	2 cut(s)	324, 775
BseXI	GCAGC	1 cut(s)	557
BshFI	GGCC	4 cut(s)	60, 539, 682, 915
BshNI	GGYRCC	2 cut(s)	319, 772
BshVI	ATCGAT	1 cut(s)	105
BsiHKCI	CYCGRG	2 cut(s)	323, 901
BsiSI	CCGG	2 cut(s)	316, 684
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	56, 902
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	2 cut(s)	16, 759
BsnI	GGCC	4 cut(s)	60, 539, 682, 915
BsoBI	CYCGRG	2 cut(s)	323, 901
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	324, 775
Bsp143I	GATC	5 cut(s)	102, 342, 474, 675, 686
Bsp1720I	GCTNAGC	1 cut(s)	643
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	4 cut(s)	128, 425, 536, 857
BspANI	GGCC	4 cut(s)	60, 539, 682, 915
BspCNI	CTCAG	3 cut(s)	351, 434, 617
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	321, 476, 774
BspPI	GGATC	4 cut(s)	350, 469, 482, 694
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	2 cut(s)	319, 772
BspTI	CTTAAG	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	55, 441
BssMI	GATC	5 cut(s)	102, 342, 474, 675, 686
BssT1I	CCWWGG	2 cut(s)	55, 441
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	1 cut(s)	522
BstAFI	CTTAAG	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	5 cut(s)	37, 338, 421, 604, 643
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	210, 331, 416
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	222, 233
BstKTI	GATC	5 cut(s)	105, 345, 477, 678, 689
BstMBI	GATC	5 cut(s)	102, 342, 474, 675, 686
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 536, 589, 632
BstSCI	CCNGG	2 cut(s)	315, 682
BstSLI	GKGCMC	2 cut(s)	324, 775
BstV1I	GCAGC	1 cut(s)	557
BstV2I	GAAGAC	1 cut(s)	567
BstX2I	RGATCY	2 cut(s)	342, 474
BstYI	RGATCY	2 cut(s)	342, 474
Bsu15I	ATCGAT	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	60, 539, 682, 915
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	3 cut(s)	210, 331, 416
BtsIMutI	CAGTG	2 cut(s)	308, 464
Cac8I	GCNNGC	1 cut(s)	656
CaiI	CAGNNNCTG	1 cut(s)	345
CfoI	GCGC	2 cut(s)	222, 233
Cfr13I	GGNCC	3 cut(s)	512, 681, 893
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	2 cut(s)	45, 442
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	5 cut(s)	37, 338, 421, 604, 643
DpnI	GATC	5 cut(s)	104, 344, 476, 677, 688
DpnII	GATC	5 cut(s)	102, 342, 474, 675, 686
DraIII	CACNNNGTG	1 cut(s)	20
EaeI	YGGCCR	1 cut(s)	913
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	55, 441
Eco47I	GGWCC	2 cut(s)	512, 893
Eco47III	AGCGCT	1 cut(s)	232
Eco81I	CCTNAGG	1 cut(s)	338
Eco88I	CYCGRG	2 cut(s)	323, 901
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRI	GAATTC	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	55, 441
ErhI	CCWWGG	2 cut(s)	55, 441
FaeI	CATG	2 cut(s)	48, 445
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	44, 441
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	3 cut(s)	537, 571, 857
FokI	GGATG	3 cut(s)	197, 318, 403
Fsp4HI	GCNGC	3 cut(s)	537, 571, 857
FspBI	CTAG	3 cut(s)	389, 554, 623
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	2 cut(s)	221, 232
GluI	GCNGC	3 cut(s)	537, 571, 857
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	60, 539, 682, 915
HapII	CCGG	2 cut(s)	316, 684
HhaI	GCGC	2 cut(s)	222, 233
Hin1II	CATG	2 cut(s)	48, 445
Hin6I	GCGC	2 cut(s)	220, 231
HinP1I	GCGC	2 cut(s)	220, 231
HinfI	GANTC	2 cut(s)	179, 299
HpaII	CCGG	2 cut(s)	316, 684
HphI	GGTGA	2 cut(s)	496, 685
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	6 cut(s)	178, 198, 296, 703, 834, 928
Hpy188III	TCNNGA	3 cut(s)	340, 478, 725
Hpy8I	GTNNAC	1 cut(s)	551
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	6 cut(s)	14, 147, 530, 573, 759, 873
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 536, 589, 632
HpyF3I	CTNAG	5 cut(s)	37, 338, 421, 604, 643
Hsp92II	CATG	2 cut(s)	48, 445
HspAI	GCGC	2 cut(s)	220, 231
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	5 cut(s)	102, 342, 474, 675, 686
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	1 cut(s)	557
LweI	GCATC	3 cut(s)	156, 219, 919
MaeI	CTAG	3 cut(s)	389, 554, 623
MaeIII	GTNAC	3 cut(s)	23, 281, 306
MalI	GATC	5 cut(s)	104, 344, 476, 677, 688
MboI	GATC	5 cut(s)	102, 342, 474, 675, 686
MboII	GAAGA	6 cut(s)	493, 509, 569, 572, 840, 843
MflI	RGATCY	2 cut(s)	342, 474
MhlI	GDGCHC	2 cut(s)	324, 775
MlsI	TGGCCA	1 cut(s)	915
MluCI	AATT	9 cut(s)	162, 190, 238, 397, 485, 690, 728, 807, 837
MluNI	TGGCCA	1 cut(s)	915
MmeI	TCCRAC	1 cut(s)	724
Mox20I	TGGCCA	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	915
MseI	TTAA	2 cut(s)	78, 765
Msp20I	TGGCCA	1 cut(s)	915
MspA1I	CMGCKG	2 cut(s)	425, 536
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	2 cut(s)	316, 684
MspR9I	CCNGG	2 cut(s)	317, 684
Mva1269I	GAATGC	2 cut(s)	16, 759
MwoI	GCNNNNNNNGC	4 cut(s)	228, 536, 589, 632
NciI	CCSGG	2 cut(s)	317, 684
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	5 cut(s)	102, 342, 474, 675, 686
NlaIII	CATG	2 cut(s)	48, 445
NlaIV	GGNNCC	3 cut(s)	321, 476, 774
NmuCI	GTSAC	3 cut(s)	23, 281, 306
NsbI	TGCGCA	1 cut(s)	221
NspV	TTCGAA	1 cut(s)	362
PctI	GAATGC	2 cut(s)	16, 759
PfeI	GAWTC	2 cut(s)	179, 299
PkrI	GCNGC	3 cut(s)	538, 572, 858
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	321, 476, 774
PspPI	GGNCC	3 cut(s)	512, 681, 893
PspPPI	RGGWCCY	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	345
PsuI	RGATCY	2 cut(s)	342, 474
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	78, 765
SatI	GCNGC	3 cut(s)	537, 571, 857
Sau3AI	GATC	5 cut(s)	102, 342, 474, 675, 686
Sau96I	GGNCC	3 cut(s)	512, 681, 893
ScrFI	CCNGG	2 cut(s)	317, 684
SduI	GDGCHC	2 cut(s)	324, 775
SfaNI	GCATC	3 cut(s)	156, 219, 919
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	2 cut(s)	512, 893
SmlI	CTYRAG	3 cut(s)	77, 541, 723
SmoI	CTYRAG	3 cut(s)	77, 541, 723
SpeI	ACTAGT	1 cut(s)	388
Sse9I	AATT	9 cut(s)	162, 190, 238, 397, 485, 690, 728, 807, 837
SsiI	CCGC	4 cut(s)	128, 425, 536, 857
SspI	AATATT	1 cut(s)	824
SspMI	CTAG	3 cut(s)	389, 554, 623
StyD4I	CCNGG	2 cut(s)	315, 682
StyI	CCWWGG	2 cut(s)	55, 441
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	2 cut(s)	105, 362
TasI	AATT	9 cut(s)	162, 190, 238, 397, 485, 690, 728, 807, 837
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	539, 859
TfiI	GAWTC	2 cut(s)	179, 299
Tru1I	TTAA	2 cut(s)	78, 765
Tru9I	TTAA	2 cut(s)	78, 765
TscAI	CASTG	2 cut(s)	315, 471
TseFI	GTSAC	3 cut(s)	23, 281, 306
TseI	GCWGC	1 cut(s)	570
Tsp45I	GTSAC	3 cut(s)	23, 281, 306
TspDTI	ATGAA	3 cut(s)	260, 320, 721
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	2 cut(s)	315, 471
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	512, 893
XapI	RAATTY	4 cut(s)	485, 728, 807, 837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XspI	CTAG	3 cut(s)	389, 554, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.