Prupe.6G011000_v2.0.a1

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
808189 .. 810095
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G011000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 936 bp
ATGAGGAATGCCAACGACTCTCAATTTGTCAGAGGTTATCACAGAGACTCTGACTCTGACTCGAAAGAGGCCAAGTGTAACGAGGCCAAAAGGGATGTGAAAGGCCCGAGATTTAAGGACCTAGGTGGAATGAAGAAGGTGCTAGAGCAGCTGGAAGACGTGATTTGCAGGCTTCGGTTTCCGAAGCTGGCAAAGTCGCTCGGAGGCAACCCCATATCTGGAATTCTCTTGCATGGACCACCAGGCTGTGGGAAGACCCAACTGGCTCACGCCATTGCCAATGAAACCGGCTTTTCCTTTCATAACGTTTCTGCCCCAAGCCTCATCAATAGTTACTATGGTGAATCTGAAAGGAATATACGAAGGCTTTTTTCCGAAGCGTATGAAACGTCGCCTTCAATTATGTTCATCGACGAAATTGATTCTATTGCTTCAAAAAGAGAGGACTCACGTTATGTTACGGCATTGGCACAACTGCTGACTTGCATGGACGAACAGAGATCGCACAATGTTCTTGTAATAGCAGCAACCAATAGACCTGATGCTCTTGACCCCGCTCTGAGGAGGCTCGGGCGATTTGATCTTGAGATTTCTTTCAATGTTCCGGATGAAAGTGACAGGGTTGAGATTCTTAAGGTGGTTACGAGCAATTTAGGCCTTGAAGGTCCTCTTAATCTTGTTAAAATAGCGCGGTCTACGGCAGGGTATGTTGGAGCTGATTTGAGAGCTGTGGCTGACAGAGCTTGTGATATTGCCAGGAAAAGGATACTAGCAGAAAGGTATCCTAATATGTCAATTGCTTCTATGAACGAGGCGAATTACAATGAAGATTGGGTGGAGAAAGAAAAAGAAAAGCTCGCCATCACTATCAGAGACGGACCCACAGTGGGGTCAATGGGGTCAAACGACCCCATGGACTCCATGGAAGCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

312

Amino Acids

34.51

Weight (kDa)

6.05

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 695
AccII CGCG 1 cut(s) 691
AccIII TCCGGA 1 cut(s) 604
AciI CCGC 2 cut(s) 555, 691
AclI AACGTT 1 cut(s) 306
AcsI RAATTY 1 cut(s) 222
AfiI CCNNNNNNNGG 6 cut(s) 218, 248, 561, 762, 887, 888
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 4 cut(s) 399, 435, 598, 662
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 2 cut(s) 241, 755
AluBI AGCT 6 cut(s) 151, 187, 716, 728, 743, 856
AluI AGCT 6 cut(s) 151, 187, 716, 728, 743, 856
Alw26I GTCTC 2 cut(s) 39, 867
Ama87I CYCGRG 2 cut(s) 106, 569
Aor13HI TCCGGA 1 cut(s) 604
AoxI GGCC 4 cut(s) 69, 84, 103, 655
ApeKI GCWGC 2 cut(s) 148, 524
ApoI RAATTY 1 cut(s) 222
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 5 cut(s) 104, 118, 236, 665, 878
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 2 cut(s) 106, 569
AvaII GGWCC 4 cut(s) 118, 236, 665, 878
AvrII CCTAGG 1 cut(s) 121
BbsI GAAGAC 2 cut(s) 162, 260
BbvI GCAGC 2 cut(s) 160, 536
BccI CCATC 1 cut(s) 869
BceAI ACGGC 2 cut(s) 477, 714
BciT130I CCWGG 2 cut(s) 243, 757
BciVI GTATCC 2 cut(s) 759, 792
BcoDI GTCTC 2 cut(s) 39, 867
BfaI CTAG 3 cut(s) 122, 143, 770
BfrI CTTAAG 1 cut(s) 632
BfuI GTATCC 2 cut(s) 759, 792
BisI GCNGC 2 cut(s) 149, 525
BlnI CCTAGG 1 cut(s) 121
BlsI GCNGC 2 cut(s) 150, 526
Bme1390I CCNGG 2 cut(s) 243, 757
Bme18I GGWCC 4 cut(s) 118, 236, 665, 878
BmeT110I CYCGRG 2 cut(s) 106, 569
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 5 cut(s) 104, 118, 236, 665, 878
BmiI GGNNCC 1 cut(s) 880
BmrFI CCNGG 2 cut(s) 243, 757
BmsI GCATC 1 cut(s) 532
BpiI GAAGAC 2 cut(s) 162, 260
BpuEI CTTGAG 1 cut(s) 605
BsaJI CCNNGG 3 cut(s) 121, 912, 921
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 248, 561, 762, 887, 888
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 604
BseBI CCWGG 2 cut(s) 243, 757
BseDI CCNNGG 3 cut(s) 121, 912, 921
BseGI GGATG 2 cut(s) 100, 613
BseLI CCNNNNNNNGG 6 cut(s) 218, 248, 561, 762, 887, 888
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 577
BseXI GCAGC 2 cut(s) 160, 536
Bsh1236I CGCG 1 cut(s) 691
BshFI GGCC 4 cut(s) 71, 86, 105, 657
BsiHKCI CYCGRG 2 cut(s) 106, 569
BsiSI CCGG 2 cut(s) 288, 605
BslI CCNNNNNNNGG 6 cut(s) 218, 248, 561, 762, 887, 888
BsmAI GTCTC 2 cut(s) 39, 867
BsmBI CGTCTC 1 cut(s) 867
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 4 cut(s) 71, 86, 105, 657
BsoBI CYCGRG 2 cut(s) 106, 569
Bsp13I TCCGGA 1 cut(s) 604
Bsp143I GATC 2 cut(s) 500, 580
Bsp19I CCATGG 2 cut(s) 912, 921
BspACI CCGC 2 cut(s) 555, 691
BspANI GGCC 4 cut(s) 71, 86, 105, 657
BspCNI CTCAG 1 cut(s) 552
BspEI TCCGGA 1 cut(s) 604
BspFNI CGCG 1 cut(s) 691
BspLI GGNNCC 1 cut(s) 880
BspTI CTTAAG 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 121, 912, 921
BssMI GATC 2 cut(s) 500, 580
BssT1I CCWWGG 3 cut(s) 121, 912, 921
Bst2UI CCWGG 2 cut(s) 243, 757
Bst4CI ACNGT 1 cut(s) 886
BstAFI CTTAAG 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 170, 189, 858
BstDEI CTNAG 1 cut(s) 560
BstDSI CCRYGG 2 cut(s) 912, 921
BstF5I GGATG 2 cut(s) 100, 613
BstFNI CGCG 1 cut(s) 691
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 2 cut(s) 503, 583
BstMAI GTCTC 2 cut(s) 39, 867
BstMBI GATC 2 cut(s) 500, 580
BstMWI GCNNNNNNNGC 3 cut(s) 148, 654, 740
BstNI CCWGG 2 cut(s) 243, 757
BstSCI CCNGG 2 cut(s) 241, 755
BstUI CGCG 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 160, 536
BstV2I GAAGAC 2 cut(s) 162, 260
BsuI GTATCC 2 cut(s) 759, 792
BsuRI GGCC 4 cut(s) 71, 86, 105, 657
BtgI CCRYGG 2 cut(s) 912, 921
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 100, 613
BtsIMutI CAGTG 1 cut(s) 891
Cac8I GCNNGC 3 cut(s) 170, 189, 858
CfoI GCGC 1 cut(s) 691
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 5 cut(s) 104, 118, 236, 665, 878
CviAII CATG 4 cut(s) 233, 487, 913, 922
DdeI CTNAG 1 cut(s) 560
DpnI GATC 2 cut(s) 502, 582
DpnII GATC 2 cut(s) 500, 580
Eco130I CCWWGG 3 cut(s) 121, 912, 921
Eco147I AGGCCT 1 cut(s) 657
Eco47I GGWCC 4 cut(s) 118, 236, 665, 878
Eco88I CYCGRG 2 cut(s) 106, 569
EcoO109I RGGNCCY 2 cut(s) 118, 665
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 241, 755
EcoT14I CCWWGG 3 cut(s) 121, 912, 921
ErhI CCWWGG 3 cut(s) 121, 912, 921
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 4 cut(s) 236, 490, 916, 925
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FatI CATG 4 cut(s) 232, 486, 912, 921
FauI CCCGC 1 cut(s) 562
FblI GTMKAC 1 cut(s) 695
Fnu4HI GCNGC 2 cut(s) 149, 525
FokI GGATG 2 cut(s) 107, 620
Fsp4HI GCNGC 2 cut(s) 149, 525
FspBI CTAG 3 cut(s) 122, 143, 770
GlaI GCGC 1 cut(s) 690
GluI GCNGC 2 cut(s) 149, 525
HaeIII GGCC 4 cut(s) 71, 86, 105, 657
HapII CCGG 2 cut(s) 288, 605
HhaI GCGC 1 cut(s) 691
Hin1II CATG 4 cut(s) 236, 490, 916, 925
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HinfI GANTC 9 cut(s) 17, 47, 53, 59, 344, 422, 446, 628, 917
HpaII CCGG 2 cut(s) 288, 605
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 696
Hpy188I TCNGA 9 cut(s) 32, 52, 58, 183, 203, 349, 376, 561, 872
Hpy188III TCNNGA 4 cut(s) 219, 548, 584, 605
Hpy8I GTNNAC 1 cut(s) 696
Hpy99I CGWCG 2 cut(s) 394, 416
HpyAV CCTTC 4 cut(s) 130, 357, 405, 656
HpyCH4III ACNGT 1 cut(s) 886
HpyCH4IV ACGT 4 cut(s) 159, 306, 389, 451
HpyCH4V TGCA 3 cut(s) 168, 232, 486
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 654, 740
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 4 cut(s) 159, 306, 389, 451
Hsp92II CATG 4 cut(s) 236, 490, 916, 925
HspAI GCGC 1 cut(s) 689
Kpn2I TCCGGA 1 cut(s) 604
Kzo9I GATC 2 cut(s) 500, 580
LmnI GCTCC 1 cut(s) 713
Lsp1109I GCAGC 2 cut(s) 160, 536
LweI GCATC 1 cut(s) 532
MaeI CTAG 3 cut(s) 122, 143, 770
MaeII ACGT 4 cut(s) 159, 306, 389, 451
MaeIII GTNAC 5 cut(s) 77, 332, 457, 614, 640
MalI GATC 2 cut(s) 502, 582
MbiI CCGCTC 1 cut(s) 557
MboI GATC 2 cut(s) 500, 580
MboII GAAGA 4 cut(s) 145, 167, 265, 839
MfeI CAATTG 1 cut(s) 795
MluCI AATT 7 cut(s) 23, 222, 399, 417, 649, 795, 817
MlyI GAGTC 6 cut(s) 11, 41, 47, 53, 440, 911
MmeI TCCRAC 1 cut(s) 691
MroI TCCGGA 1 cut(s) 604
MseI TTAA 4 cut(s) 114, 633, 672, 681
MspA1I CMGCKG 1 cut(s) 151
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 2 cut(s) 288, 605
MspR9I CCNGG 2 cut(s) 243, 757
MunI CAATTG 1 cut(s) 795
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 2 cut(s) 243, 757
MvnI CGCG 1 cut(s) 691
MwoI GCNNNNNNNGC 3 cut(s) 148, 654, 740
NcoI CCATGG 2 cut(s) 912, 921
NdeII GATC 2 cut(s) 500, 580
NlaIII CATG 4 cut(s) 236, 490, 916, 925
NlaIV GGNNCC 1 cut(s) 880
NmuCI GTSAC 1 cut(s) 614
PceI AGGCCT 1 cut(s) 657
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 3 cut(s) 344, 422, 628
PflMI CCANNNNNTGG 1 cut(s) 248
PkrI GCNGC 2 cut(s) 150, 526
PleI GAGTC 6 cut(s) 11, 41, 47, 53, 440, 911
PpsI GAGTC 6 cut(s) 11, 41, 47, 53, 440, 911
PpuMI RGGWCCY 2 cut(s) 118, 665
Psp1406I AACGTT 1 cut(s) 306
Psp5II RGGWCCY 2 cut(s) 118, 665
Psp6I CCWGG 2 cut(s) 241, 755
PspGI CCWGG 2 cut(s) 241, 755
PspN4I GGNNCC 1 cut(s) 880
PspPI GGNCC 5 cut(s) 104, 118, 236, 665, 878
PspPPI RGGWCCY 2 cut(s) 118, 665
PvuII CAGCTG 1 cut(s) 151
SaqAI TTAA 4 cut(s) 114, 633, 672, 681
SatI GCNGC 2 cut(s) 149, 525
Sau3AI GATC 2 cut(s) 500, 580
Sau96I GGNCC 5 cut(s) 104, 118, 236, 665, 878
SchI GAGTC 6 cut(s) 11, 41, 47, 53, 440, 911
ScrFI CCNGG 2 cut(s) 243, 757
SfaNI GCATC 1 cut(s) 532
SinI GGWCC 4 cut(s) 118, 236, 665, 878
SmlI CTYRAG 2 cut(s) 584, 632
SmoI CTYRAG 2 cut(s) 584, 632
Sse9I AATT 7 cut(s) 23, 222, 399, 417, 649, 795, 817
SseBI AGGCCT 1 cut(s) 657
SsiI CCGC 2 cut(s) 555, 691
SspMI CTAG 3 cut(s) 122, 143, 770
StuI AGGCCT 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 241, 755
StyI CCWWGG 3 cut(s) 121, 912, 921
TaaI ACNGT 1 cut(s) 886
TaiI ACGT 4 cut(s) 162, 309, 392, 454
TaqI TCGA 2 cut(s) 62, 411
TasI AATT 7 cut(s) 23, 222, 399, 417, 649, 795, 817
TfiI GAWTC 3 cut(s) 344, 422, 628
Tru1I TTAA 4 cut(s) 114, 633, 672, 681
Tru9I TTAA 4 cut(s) 114, 633, 672, 681
TscAI CASTG 1 cut(s) 891
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 2 cut(s) 148, 524
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 8 cut(s) 146, 290, 297, 397, 399, 624, 821, 840
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 1 cut(s) 891
Van91I CCANNNNNTGG 1 cut(s) 248
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 4 cut(s) 118, 236, 665, 878
XapI RAATTY 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XmaJI CCTAGG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 695
XspI CTAG 3 cut(s) 122, 143, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.