Prupe.6G011100_v2.0.a1

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
816187 .. 819217
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G011100.1_v2.0.a1.CDS.7

Sequence Viewer

Length: 762 bp
ATGGGAAATGGTTTACGGCAAATCAGCATTATGTTCAATGAAAAAACTAAAATTCATGCACGCAACATAATTTCAGGGACAAGATCGATCCATTCGTCCTCACCCCTATTTTTTCATAATCGTTTGGCATCCTTCATGAAGCCTTTATCTAGAAATGAAAATGACCATGACATAGATGCTTCTTTGGAAAAAGAAAAAGAAAAAGAAAAAGAAAAGCTCACGGCTGATTTTCAGAAAGCAGTTCAAGAGGATCCGCCTTCGTTAAAAAGACAAGGATTCTCTGCAATTCCTGATGTGAAATGGGCAGGTGTTGGTGATGATGCTTTGAGGCACGAACTTGATCTTCATATAGAATTTGAAATGAAGCTAGAGACAGGTTTTCTGCTCTATGGTCCTCCAGGGTGCGGTAAAACATTGATCGCCGAGGCTGTTGCTAATGAGGTAGGAGCTAACTTCATTCACATTAAGGGCCCTGAACTTCTGAATAAAAAGTGGGGAGAAAGTGAGAAGGCAGTTCGAACATTGTTCAGCCGTGCAAGGGCGTGCACACCATGCATACTTTTCTTTGATGAGGTGGATGCTTTGACAACAAAGCGAGGACAAGAAGGAGGGCAGAGTGTTGAGCTGCTATTGAACCAGTTACTTGTACAGTTGGTCGGTGGAGACCAGCGGAAGGGTGTAATTGTCATTGGTGCCACTAATAGTTTTCATGACCATGATGATGATGATTATGATGATGATTATGCATTTCTGCATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

254

Amino Acids

28.3

Weight (kDa)

5.59

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 692
AciI CCGC 3 cut(s) 254, 405, 670
AclWI GGATC 3 cut(s) 82, 245, 258
AcsI RAATTY 2 cut(s) 51, 353
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 3 cut(s) 404, 538, 673
AgsI TTSAA 4 cut(s) 37, 245, 359, 634
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 4 cut(s) 217, 367, 449, 625
AluI AGCT 4 cut(s) 217, 367, 449, 625
Alw21I GWGCWC 1 cut(s) 548
Alw26I GTCTC 2 cut(s) 365, 657
Alw44I GTGCAC 1 cut(s) 544
AlwI GGATC 3 cut(s) 82, 245, 258
AoxI GGCC 1 cut(s) 469
ApaI GGGCCC 1 cut(s) 473
ApaLI GTGCAC 1 cut(s) 544
ApeKI GCWGC 1 cut(s) 625
ApoI RAATTY 2 cut(s) 51, 353
AspS9I GGNCC 3 cut(s) 392, 469, 470
AsuHPI GGTGA 2 cut(s) 93, 326
AsuII TTCGAA 1 cut(s) 517
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 2 cut(s) 473, 548
BamHI GGATCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 612
BceAI ACGGC 3 cut(s) 32, 237, 516
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 365, 657
BfaI CTAG 2 cut(s) 150, 368
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 627
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 392, 469, 470
BmiI GGNNCC 3 cut(s) 252, 471, 694
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 4 cut(s) 137, 166, 310, 568
BpmI CTGGAG 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 517
Bsa29I ATCGAT 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 657
BsaJI CCNNGG 2 cut(s) 398, 423
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 538, 673
Bse1I ACTGG 1 cut(s) 637
BseBI CCWGG 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 398, 423
BseGI GGATG 2 cut(s) 128, 583
BseLI CCNNNNNNNGG 3 cut(s) 404, 538, 673
BseNI ACTGG 1 cut(s) 637
BseSI GKGCMC 2 cut(s) 473, 548
BseXI GCAGC 1 cut(s) 612
BshFI GGCC 1 cut(s) 471
BshNI GGYRCC 1 cut(s) 692
BshVI ATCGAT 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 548
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 404, 538, 673
BsmAI GTCTC 2 cut(s) 365, 657
BsmFI GGGAC 1 cut(s) 91
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 1 cut(s) 657
Bsp119I TTCGAA 1 cut(s) 517
Bsp120I GGGCCC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 473, 548
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 5 cut(s) 83, 87, 250, 340, 417
BspACI CCGC 3 cut(s) 254, 405, 670
BspANI GGCC 1 cut(s) 471
BspDI ATCGAT 1 cut(s) 86
BspHI TCATGA 2 cut(s) 135, 709
BspLI GGNNCC 3 cut(s) 252, 471, 694
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 3 cut(s) 82, 245, 258
BspT104I TTCGAA 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 2 cut(s) 398, 423
BssMI GATC 5 cut(s) 83, 87, 250, 340, 417
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 1 cut(s) 651
BstAPI GCANNNNNTGC 1 cut(s) 552
BstAUI TGTACA 1 cut(s) 646
BstBI TTCGAA 1 cut(s) 517
BstC8I GCNNGC 2 cut(s) 61, 544
BstF5I GGATG 2 cut(s) 128, 583
BstKTI GATC 5 cut(s) 86, 90, 253, 343, 420
BstMAI GTCTC 2 cut(s) 365, 657
BstMBI GATC 5 cut(s) 83, 87, 250, 340, 417
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 397
BstSLI GKGCMC 2 cut(s) 473, 548
BstV1I GCAGC 1 cut(s) 612
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 86
BsuRI GGCC 1 cut(s) 471
BsuTUI ATCGAT 1 cut(s) 86
BtsCI GGATG 2 cut(s) 128, 583
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 61, 544
CciI TCATGA 2 cut(s) 135, 709
Cfr13I GGNCC 3 cut(s) 392, 469, 470
ClaI ATCGAT 1 cut(s) 86
Csp6I GTAC 1 cut(s) 647
CviAII CATG 6 cut(s) 56, 136, 167, 552, 710, 716
CviJI RGCY 9 cut(s) 142, 217, 224, 367, 428, 449, 471, 531, 625
CviKI_1 RGCY 9 cut(s) 142, 217, 224, 367, 428, 449, 471, 531, 625
CviQI GTAC 1 cut(s) 647
DpnI GATC 5 cut(s) 85, 89, 252, 342, 419
DpnII GATC 5 cut(s) 83, 87, 250, 340, 417
EciI GGCGGA 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 392
EcoO109I RGGNCCY 2 cut(s) 469, 470
EcoRII CCWGG 1 cut(s) 397
EcoT22I ATGCAT 2 cut(s) 557, 748
EcoT38I GRGCYC 1 cut(s) 473
FaeI CATG 6 cut(s) 59, 139, 170, 555, 713, 719
FaqI GGGAC 1 cut(s) 91
FatI CATG 6 cut(s) 55, 135, 166, 551, 709, 715
Fnu4HI GCNGC 1 cut(s) 626
FokI GGATG 2 cut(s) 115, 590
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 1 cut(s) 626
FspBI CTAG 2 cut(s) 150, 368
GluI GCNGC 1 cut(s) 626
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 1 cut(s) 471
Hin1II CATG 6 cut(s) 59, 139, 170, 555, 713, 719
HinfI GANTC 1 cut(s) 276
HphI GGTGA 2 cut(s) 93, 326
Hpy166II GTNNAC 2 cut(s) 14, 546
Hpy188I TCNGA 3 cut(s) 234, 483, 761
Hpy188III TCNNGA 5 cut(s) 136, 150, 245, 290, 710
Hpy8I GTNNAC 2 cut(s) 14, 546
HpyAV CCTTC 5 cut(s) 142, 267, 502, 599, 667
HpyCH4III ACNGT 1 cut(s) 651
HpyCH4V TGCA 7 cut(s) 59, 284, 536, 546, 555, 746, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
Hsp92II CATG 6 cut(s) 59, 139, 170, 555, 713, 719
Kzo9I GATC 5 cut(s) 83, 87, 250, 340, 417
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 9 cut(s) 60, 291, 303, 360, 384, 411, 486, 650, 680
Lsp1109I GCAGC 1 cut(s) 612
LweI GCATC 4 cut(s) 137, 166, 310, 568
MaeI CTAG 2 cut(s) 150, 368
MaeIII GTNAC 1 cut(s) 639
MalI GATC 5 cut(s) 85, 89, 252, 342, 419
MboI GATC 5 cut(s) 83, 87, 250, 340, 417
MboII GAAGA 1 cut(s) 335
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 473, 548
MluCI AATT 5 cut(s) 51, 69, 285, 353, 681
MnlI CCTC 9 cut(s) 109, 241, 321, 405, 418, 433, 565, 590, 602
Mph1103I ATGCAT 2 cut(s) 557, 748
MseI TTAA 2 cut(s) 263, 465
MslI CAYNNNNRTG 2 cut(s) 714, 720
MspA1I CMGCKG 1 cut(s) 670
MspR9I CCNGG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 1 cut(s) 552
NdeII GATC 5 cut(s) 83, 87, 250, 340, 417
NlaIII CATG 6 cut(s) 59, 139, 170, 555, 713, 719
NlaIV GGNNCC 3 cut(s) 252, 471, 694
NmeAIII GCCGAG 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 557, 748
NspV TTCGAA 1 cut(s) 517
PagI TCATGA 2 cut(s) 135, 709
PaqCI CACCTGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 397
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 3 cut(s) 252, 471, 694
PspOMI GGGCCC 1 cut(s) 469
PspPI GGNCC 3 cut(s) 392, 469, 470
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 2 cut(s) 714, 720
SaqAI TTAA 2 cut(s) 263, 465
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 5 cut(s) 83, 87, 250, 340, 417
Sau96I GGNCC 3 cut(s) 392, 469, 470
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 2 cut(s) 473, 548
SetI ASST 8 cut(s) 219, 310, 369, 379, 444, 451, 576, 627
SfaNI GCATC 4 cut(s) 137, 166, 310, 568
SfuI TTCGAA 1 cut(s) 517
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 714, 720
Sse9I AATT 5 cut(s) 51, 69, 285, 353, 681
SsiI CCGC 3 cut(s) 254, 405, 670
SspMI CTAG 2 cut(s) 150, 368
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 651
TaqI TCGA 2 cut(s) 86, 517
TasI AATT 5 cut(s) 51, 69, 285, 353, 681
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 2 cut(s) 263, 465
Tru9I TTAA 2 cut(s) 263, 465
TseI GCWGC 1 cut(s) 625
VneI GTGCAC 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 392
XapI RAATTY 2 cut(s) 51, 353
XbaI TCTAGA 1 cut(s) 149
XspI CTAG 2 cut(s) 150, 368
Zsp2I ATGCAT 2 cut(s) 557, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.