Prupe.6G011400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
836792 .. 839095
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G011400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 291 bp
ATGCATGAAGCTGCTATGGCTGCTGTTGAAGAGAAACTAACGTCACTTGCGAGTTGGGGTTCATCTCCATGCATAATCAAAGAAACTCACTTTAAGCAAGCACTGGCTAAAATCACACCCTCTCTAAGCGACAAGGATTTGCGAGACTATGGGAATTTCCGAAAGCAGCAGGGCAAATGGACTTCAAAAAGGAAAGCAAGAAAAGGAGAACATGTTTGTCAAGAATGTCCTTACCGATTTTTCATTTATTTTTATTTAACTAGCTTTATTTTAAGGTATTTATTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.29

Weight (kDa)

9.51

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 154
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 2 cut(s) 29, 186
AluBI AGCT 2 cut(s) 11, 264
AluI AGCT 2 cut(s) 11, 264
Alw26I GTCTC 1 cut(s) 138
ApeKI GCWGC 3 cut(s) 11, 20, 166
ApoI RAATTY 1 cut(s) 154
BbvI GCAGC 2 cut(s) 7, 178
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 261
BisI GCNGC 3 cut(s) 12, 21, 167
BlsI GCNGC 3 cut(s) 13, 22, 168
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse1I ACTGG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 7, 178
BsmAI GTCTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 17, 20
BstNSI RCATGY 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 7, 178
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 99
CviAII CATG 3 cut(s) 5, 69, 212
CviJI RGCY 4 cut(s) 11, 20, 107, 264
CviKI_1 RGCY 4 cut(s) 11, 20, 107, 264
DdeI CTNAG 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EcoT22I ATGCAT 2 cut(s) 6, 74
FaeI CATG 3 cut(s) 8, 72, 215
FaiI YATR 6 cut(s) 6, 17, 70, 74, 150, 213
FatI CATG 3 cut(s) 4, 68, 211
Fnu4HI GCNGC 3 cut(s) 12, 21, 167
Fsp4HI GCNGC 3 cut(s) 12, 21, 167
FspBI CTAG 1 cut(s) 261
GluI GCNGC 3 cut(s) 12, 21, 167
Hin1II CATG 3 cut(s) 8, 72, 215
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 4, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 20
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 3 cut(s) 8, 72, 215
LpnPI CCDG 2 cut(s) 89, 155
Lsp1109I GCAGC 2 cut(s) 7, 178
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 42
MboII GAAGA 1 cut(s) 41
MluCI AATT 1 cut(s) 154
MnlI CCTC 1 cut(s) 130
Mph1103I ATGCAT 2 cut(s) 6, 74
MseI TTAA 4 cut(s) 93, 257, 272, 289
MslI CAYNNNNRTG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 17, 20
NlaIII CATG 3 cut(s) 8, 72, 215
NmuCI GTSAC 1 cut(s) 42
NsiI ATGCAT 2 cut(s) 6, 74
NspI RCATGY 1 cut(s) 215
PciI ACATGT 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PkrI GCNGC 3 cut(s) 13, 22, 168
PscI ACATGT 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 67
SaqAI TTAA 4 cut(s) 93, 257, 272, 289
SatI GCNGC 3 cut(s) 12, 21, 167
SetI ASST 4 cut(s) 13, 44, 266, 278
SmiMI CAYNNNNRTG 1 cut(s) 67
Sse9I AATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 261
TaiI ACGT 1 cut(s) 44
TasI AATT 1 cut(s) 154
Tru1I TTAA 4 cut(s) 93, 257, 272, 289
Tru9I TTAA 4 cut(s) 93, 257, 272, 289
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 3 cut(s) 11, 20, 166
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 21, 51, 232
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 215
XspI CTAG 1 cut(s) 261
Zsp2I ATGCAT 2 cut(s) 6, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.