Prupe.6G012800_v2.0.a1

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
895673 .. 896207
535 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G012800.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 228 bp
ATGATCTTCTCTGTTCCCATTGTGTCATTTGGGGCAGGGGGAAGCGTGCTTCAACCTTATGGGGTTGCTTGGTACAGTCTCTATTTTGAAACATTTGGATGGAGCGCAAGAAGAGGATTTTTTATGAGGATGAGGGAGTGGGTGTTGGTGTGTCACTTCAGATTTTGGGGCTTTTTTCCTGGTTCCTTGTGTTTTTCTAGGCCATATATGATTTCTTTCAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.79

Weight (kDa)

9.69

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 1 cut(s) 74
AgsI TTSAA 2 cut(s) 53, 89
AjnI CCWGG 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 83
AoxI GGCC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 107
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
BseBI CCWGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 104, 135
BshFI GGCC 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 184
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 47
BstF5I GGATG 2 cut(s) 104, 135
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 104, 135
Cac8I GCNNGC 1 cut(s) 47
CfoI GCGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 73
CviJI RGCY 2 cut(s) 171, 202
CviKI_1 RGCY 2 cut(s) 171, 202
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 178
FaiI YATR 5 cut(s) 60, 125, 205, 207, 209
FokI GGATG 2 cut(s) 111, 142
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 106
HaeIII GGCC 1 cut(s) 202
HhaI GCGC 1 cut(s) 107
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 77
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 21, 165, 192
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 123
MnlI CCTC 3 cut(s) 107, 120, 126
MslI CAYNNNNRTG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 97
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 1 cut(s) 180
SetI ASST 1 cut(s) 58
SgeI CNNG 8 cut(s) 48, 58, 81, 120, 191, 192, 199, 210
SmiMI CAYNNNNRTG 1 cut(s) 97
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 77
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.