Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1064011 .. 1065007

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G014600.1_v2.0.a1.CDS.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

GTTTCTAAAAACGCCATTCCACCACATTGCTTCAACCGCTCTCTCCTCCGCTCCTTCTCCTATGTCCTCTTCGACCTAACCCTGTCCTTCCTCCCCTACCACATTGCCACCTCATACTTCCACCTCCTCCCTCACCCCCTCCTCCCCTACATCTCTTGGCCCATCTATTGGATCCTCCAAGGCTGCATGCTAACCAGTGTGTGGATCATCGCACATGAATGTGGCCACCATGCCTTCAGTGACTACCAAATAGTGGACAACGTCGTTGGCCTCGTCCTCCCCACTGCCCTTCTTGTCCTTTATTTCTCAAGGAAGTACAGCCACCGCCGCAACCACTCGATCGACATCGGTTCGATGGAGCGGGACGAAGTGTTCGTTCCAAAACCAAAGTCTAATATGCCATGGTACAACAATTACTTCAACAACACACCAGGCAGGCTCTTGGTTATTCTTGTCACTCTAACAGTCGGCTGGCCCTTGTATTTGGCTTTCAACATCTCGGGCCAGGAATACGACCGGTTTACATGCCACTACGATCCCAACGGCCCTATATTTTCCAACTGGGAGAGGCTCCAAGTACACATTTCTGACCTCGGGATCATGTCTGCTATTTATGTGCTCTATAAAATTGTCAAGGCCAAAGGAGACTATGGGGTGCTTAACAAGGTGTTCCATACACATGTTGTGCACCATCTCTTCTCTACAATGCCGCATTATCATGCAATGGAAGCAACCAATGTGCTCAAGCCTATTTTGGGAGAGTATTATAGTGTTGATGCAACTCCAATTTGGAAGGCTCTGTGGAGGGAAGCTAGAGAGTGCCTTTTTATTGAACCTGATGAGGATGGTGCTCAAAACGATGTGTTTTGGTACCGGAACAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016705 GO:0016709 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050183 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 map01040 map01212

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

296

Amino Acids

34.46

Weight (kDa)

7.05

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	870
AccB1I	GGYRCC	1 cut(s)	870
AccB7I	CCANNNNNTGG	3 cut(s)	168, 201, 253
AccBSI	CCGCTC	3 cut(s)	39, 51, 361
AciI	CCGC	6 cut(s)	37, 49, 325, 328, 361, 710
AclWI	GGATC	5 cut(s)	166, 179, 212, 530, 605
AcoI	YGGCCR	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	4 cut(s)	317, 407, 579, 872
AfiI	CCNNNNNNNGG	4 cut(s)	168, 201, 253, 755
AflIII	ACRYGT	1 cut(s)	679
AgeI	ACCGGT	1 cut(s)	516
AgsI	TTSAA	4 cut(s)	34, 421, 493, 833
AjnI	CCWGG	2 cut(s)	430, 504
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	1 cut(s)	812
AluI	AGCT	1 cut(s)	812
Alw21I	GWGCWC	4 cut(s)	621, 690, 744, 853
Alw26I	GTCTC	1 cut(s)	639
Alw44I	GTGCAC	1 cut(s)	686
AlwI	GGATC	5 cut(s)	166, 179, 212, 530, 605
Ama87I	CYCGRG	2 cut(s)	499, 593
AoxI	GGCC	7 cut(s)	158, 223, 268, 473, 502, 544, 636
ApaLI	GTGCAC	1 cut(s)	686
ApeKI	GCWGC	1 cut(s)	183
ArsI	GACNNNNNNTTYG	4 cut(s)	356, 374, 388, 406
AsiGI	ACCGGT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	881
Asp718I	GGTACC	1 cut(s)	870
AspS9I	GGNCC	4 cut(s)	159, 474, 502, 545
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	2 cut(s)	499, 593
BaeGI	GKGCMC	1 cut(s)	690
BalI	TGGCCA	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	870
Bbv12I	GWGCWC	4 cut(s)	621, 690, 744, 853
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	4 cut(s)	170, 349, 699, 839
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	2 cut(s)	432, 506
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	1 cut(s)	813
BisI	GCNGC	3 cut(s)	184, 328, 710
BlsI	GCNGC	3 cut(s)	185, 329, 711
Bme1390I	CCNGG	2 cut(s)	432, 506
BmeT110I	CYCGRG	2 cut(s)	499, 593
BmgT120I	GGNCC	4 cut(s)	159, 474, 502, 545
BmiI	GGNNCC	3 cut(s)	173, 572, 872
BmrFI	CCNGG	2 cut(s)	432, 506
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	1 cut(s)	766
BmuI	ACTGGG	1 cut(s)	571
BpuEI	CTTGAG	2 cut(s)	292, 728
BsaBI	GATNNNNATC	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	178, 401, 592
BsaWI	WCCGGW	2 cut(s)	516, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 201, 253, 755
Bse118I	RCCGGY	1 cut(s)	516
Bse1I	ACTGG	2 cut(s)	195, 566
Bse3DI	GCAATG	3 cut(s)	25, 102, 729
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	432, 506
BseDI	CCNNGG	3 cut(s)	178, 401, 592
BseGI	GGATG	1 cut(s)	850
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	4 cut(s)	168, 201, 253, 755
BseMI	GCAATG	3 cut(s)	25, 102, 729
BseNI	ACTGG	2 cut(s)	195, 566
BseRI	GAGGAG	3 cut(s)	35, 116, 131
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	1 cut(s)	170
Bsh1285I	CGRYCG	2 cut(s)	342, 517
BshFI	GGCC	7 cut(s)	160, 225, 270, 475, 504, 546, 638
BshNI	GGYRCC	1 cut(s)	870
BshTI	ACCGGT	1 cut(s)	516
BsiEI	CGRYCG	2 cut(s)	342, 517
BsiHKAI	GWGCWC	4 cut(s)	621, 690, 744, 853
BsiHKCI	CYCGRG	2 cut(s)	499, 593
BsiSI	CCGG	2 cut(s)	517, 874
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	4 cut(s)	168, 201, 253, 755
BsmAI	GTCTC	1 cut(s)	639
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	7 cut(s)	160, 225, 270, 475, 504, 546, 638
BsoBI	CYCGRG	2 cut(s)	499, 593
Bsp1286I	GDGCHC	4 cut(s)	621, 690, 744, 853
Bsp143I	GATC	5 cut(s)	171, 204, 339, 535, 597
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	6 cut(s)	37, 49, 325, 328, 361, 710
BspANI	GGCC	7 cut(s)	160, 225, 270, 475, 504, 546, 638
BspLI	GGNNCC	3 cut(s)	173, 572, 872
BspPI	GGATC	5 cut(s)	166, 179, 212, 530, 605
BspT107I	GGYRCC	1 cut(s)	870
BsrBI	CCGCTC	3 cut(s)	39, 51, 361
BsrDI	GCAATG	3 cut(s)	25, 102, 729
BsrFI	RCCGGY	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	195, 566
BssAI	RCCGGY	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	178, 401, 592
BssMI	GATC	5 cut(s)	171, 204, 339, 535, 597
BssT1I	CCWWGG	2 cut(s)	178, 401
Bst2UI	CCWGG	2 cut(s)	432, 506
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	74, 701
BstC8I	GCNNGC	3 cut(s)	188, 437, 473
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	850
BstKTI	GATC	5 cut(s)	174, 207, 342, 538, 600
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	5 cut(s)	171, 204, 339, 535, 597
BstMCI	CGRYCG	2 cut(s)	342, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 327, 728
BstNI	CCWGG	2 cut(s)	432, 506
BstNSI	RCATGY	3 cut(s)	190, 528, 683
BstSCI	CCNGG	2 cut(s)	430, 504
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	7 cut(s)	160, 225, 270, 475, 504, 546, 638
BtgI	CCRYGG	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	202, 244, 282
Cac8I	GCNNGC	3 cut(s)	188, 437, 473
Cfr10I	RCCGGY	1 cut(s)	516
Cfr13I	GGNCC	4 cut(s)	159, 474, 502, 545
Csp6I	GTAC	4 cut(s)	316, 406, 578, 871
CspAI	ACCGGT	1 cut(s)	516
CviAII	CATG	8 cut(s)	187, 215, 230, 402, 525, 601, 680, 719
CviQI	GTAC	4 cut(s)	316, 406, 578, 871
DpnI	GATC	5 cut(s)	173, 206, 341, 537, 599
DpnII	GATC	5 cut(s)	171, 204, 339, 535, 597
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	74, 701
EarI	CTCTTC	2 cut(s)	74, 701
Eco130I	CCWWGG	2 cut(s)	178, 401
Eco57I	CTGAAG	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	499, 593
EcoRII	CCWGG	2 cut(s)	430, 504
EcoT14I	CCWWGG	2 cut(s)	178, 401
ErhI	CCWWGG	2 cut(s)	178, 401
FaeI	CATG	8 cut(s)	190, 218, 233, 405, 528, 604, 683, 722
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	8 cut(s)	186, 214, 229, 401, 524, 600, 679, 718
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	184, 328, 710
FokI	GGATG	1 cut(s)	857
Fsp4HI	GCNGC	3 cut(s)	184, 328, 710
FspBI	CTAG	1 cut(s)	813
GluI	GCNGC	3 cut(s)	184, 328, 710
HaeIII	GGCC	7 cut(s)	160, 225, 270, 475, 504, 546, 638
HapII	CCGG	2 cut(s)	517, 874
Hin1II	CATG	8 cut(s)	190, 218, 233, 405, 528, 604, 683, 722
HpaII	CCGG	2 cut(s)	517, 874
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	4 cut(s)	256, 522, 580, 688
Hpy188I	TCNGA	2 cut(s)	589, 887
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	4 cut(s)	256, 522, 580, 688
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	5 cut(s)	64, 97, 244, 299, 787
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	186, 688, 722, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 327, 728
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	8 cut(s)	190, 218, 233, 405, 528, 604, 683, 722
KpnI	GGTACC	1 cut(s)	874
Kzo9I	GATC	5 cut(s)	171, 204, 339, 535, 597
LmnI	GCTCC	3 cut(s)	56, 358, 576
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	239, 454
MalI	GATC	5 cut(s)	173, 206, 341, 537, 599
MbiI	CCGCTC	3 cut(s)	39, 51, 361
MboI	GATC	5 cut(s)	171, 204, 339, 535, 597
MboII	GAAGA	2 cut(s)	61, 688
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	4 cut(s)	621, 690, 744, 853
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	3 cut(s)	412, 627, 786
MluNI	TGGCCA	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	582
Mox20I	TGGCCA	1 cut(s)	225
MroXI	GAANNNNTTC	1 cut(s)	881
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	4 cut(s)	217, 219, 678, 717
Msp20I	TGGCCA	1 cut(s)	225
MspI	CCGG	2 cut(s)	517, 874
MspR9I	CCNGG	2 cut(s)	432, 506
MvaI	CCWGG	2 cut(s)	432, 506
MwoI	GCNNNNNNNGC	3 cut(s)	36, 327, 728
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	5 cut(s)	171, 204, 339, 535, 597
NlaIII	CATG	8 cut(s)	190, 218, 233, 405, 528, 604, 683, 722
NlaIV	GGNNCC	3 cut(s)	173, 572, 872
NmuCI	GTSAC	2 cut(s)	239, 454
NspI	RCATGY	3 cut(s)	190, 528, 683
PaeI	GCATGC	1 cut(s)	190
PciI	ACATGT	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 372
PdmI	GAANNNNTTC	1 cut(s)	881
PflFI	GACNNNGTC	1 cut(s)	260
PflMI	CCANNNNNTGG	3 cut(s)	168, 201, 253
PinAI	ACCGGT	1 cut(s)	516
PkrI	GCNGC	3 cut(s)	185, 329, 711
Ple19I	CGATCG	1 cut(s)	342
PscI	ACATGT	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	430, 504
PspGI	CCWGG	2 cut(s)	430, 504
PspN4I	GGNNCC	3 cut(s)	173, 572, 872
PspPI	GGNCC	4 cut(s)	159, 474, 502, 545
PsuI	RGATCY	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	260
PvuI	CGATCG	1 cut(s)	342
RsaI	GTAC	4 cut(s)	317, 407, 579, 872
RsaNI	GTAC	4 cut(s)	316, 406, 578, 871
RseI	CAYNNNNRTG	4 cut(s)	217, 219, 678, 717
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	3 cut(s)	184, 328, 710
Sau3AI	GATC	5 cut(s)	171, 204, 339, 535, 597
Sau96I	GGNCC	4 cut(s)	159, 474, 502, 545
ScrFI	CCNGG	2 cut(s)	432, 506
SduI	GDGCHC	4 cut(s)	621, 690, 744, 853
SetI	ASST	8 cut(s)	78, 113, 126, 264, 594, 669, 814, 838
SfaNI	GCATC	1 cut(s)	766
SmiMI	CAYNNNNRTG	4 cut(s)	217, 219, 678, 717
SmlI	CTYRAG	2 cut(s)	307, 743
SmoI	CTYRAG	2 cut(s)	307, 743
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	3 cut(s)	412, 627, 786
SsiI	CCGC	6 cut(s)	37, 49, 325, 328, 361, 710
SspMI	CTAG	1 cut(s)	813
StyD4I	CCNGG	2 cut(s)	430, 504
StyI	CCWWGG	2 cut(s)	178, 401
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	4 cut(s)	72, 338, 342, 353
TasI	AATT	3 cut(s)	412, 627, 786
TatI	WGTACW	2 cut(s)	315, 577
TauI	GCSGC	2 cut(s)	330, 712
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	3 cut(s)	202, 244, 289
TseFI	GTSAC	2 cut(s)	239, 454
TseI	GCWGC	1 cut(s)	183
Tsp45I	GTSAC	2 cut(s)	239, 454
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	3 cut(s)	202, 244, 289
Tth111I	GACNNNGTC	1 cut(s)	260
Van91I	CCANNNNNTGG	3 cut(s)	168, 201, 253
VneI	GTGCAC	1 cut(s)	686
XceI	RCATGY	3 cut(s)	190, 528, 683
XmnI	GAANNNNTTC	1 cut(s)	881
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.