Prupe.6G019400_v2.0.a1

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
1441292 .. 1443935
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G019400.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 816 bp
ATGGCAGTTGAGATGGGGTGTTACAGTGTTGGTAGAGAAGGATTGTTGGAGGATCTAGCTTTATTTTGGAAACATGGAGTAGAAGTAACAGTTCTCTCTTCTTCTCCAGGGCATATTGATGCCATTTTGCAGGGAGTGGATGGGTGCTTTGATGAAAAGGAAGGACCATATTTGGTGTTACACCACCTCCTACTTGCTTATGCAAATTCTGTAAAATTGTACAAGACTAAATATCAGACATCTCAAAAAGGGTTGATGGGGATAACAATTGTGAAACACTGGTTTGTGCCTCTTTCGGAATCAAAGCAAAATAAAGCACCTGCCTTACGGGTTTTAGATTTATGTATGGATGCTGCCACTCGCATCGCAAGTGGTGAATATCCTCGCCGCATGCTAGCCATTCTTGGTAGACAGTTATCGAAATTTACTAGAGCTCAATCGAAGTTGCTAGCTGGGTCGCTGGATTTTCTTGGAATAAATTACTATGCTAGTTACTATGCAAGCGATGCACATAAGAGTACTCAATTATCTTTAAATGGAGTGCAAGGTGCTTTAGACTGGCTAAATATTTATCCCAAAGGAATTGAAGAACTTTTGATCTACACAACGAACAAGTATCGTAATTCCCTAATTTACATTACTGAGAATGGCATCGATGAGTTCAATAATCCCAAATTATCACTTGCGGAAGTCCTCAATGATACCACTAAAATTGACTACTACAAGCACCACATATATTATATTCAAAGTGCAATAAGACGTGGTGACAGGGTGAAGGGATATTTTCCATGGTCATTGTTAGACAATTATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko00460 ko00500 ko00940 ko01100 ko01110 map00380 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

272

Amino Acids

30.69

Weight (kDa)

8.53

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 409
AciI CCGC 2 cut(s) 388, 686
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 2 cut(s) 205, 422
AfaI GTAC 2 cut(s) 221, 520
AgsI TTSAA 3 cut(s) 587, 664, 746
AjiI CACGTC 1 cut(s) 761
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 3 cut(s) 59, 434, 452
AluI AGCT 3 cut(s) 59, 434, 452
Alw21I GWGCWC 1 cut(s) 436
AlwI GGATC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 205, 422
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 386, 776, 784
AsuNHI GCTAGC 2 cut(s) 394, 448
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 340
BccI CCATC 3 cut(s) 7, 134, 250
BciT130I CCWGG 1 cut(s) 108
BfaI CTAG 5 cut(s) 56, 395, 429, 449, 489
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 2 cut(s) 354, 388
BlsI GCNGC 2 cut(s) 355, 389
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 761
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 5 cut(s) 109, 340, 372, 496, 660
BmtI GCTAGC 2 cut(s) 398, 452
BpmI CTGGAG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 107, 788
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 171, 201
Bse1I ACTGG 2 cut(s) 284, 563
BseBI CCWGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 107, 788
BseGI GGATG 2 cut(s) 145, 355
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 2 cut(s) 284, 563
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 452
BshVI ATCGAT 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 2 cut(s) 52, 597
Bsp19I CCATGG 1 cut(s) 788
BspACI CCGC 2 cut(s) 388, 686
BspCNI CTCAG 1 cut(s) 634
BspDI ATCGAT 1 cut(s) 654
BspMI ACCTGC 1 cut(s) 328
BspOI GCTAGC 2 cut(s) 398, 452
BspPI GGATC 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 2 cut(s) 284, 563
BssECI CCNNGG 2 cut(s) 107, 788
BssMI GATC 2 cut(s) 52, 597
BssT1I CCWWGG 1 cut(s) 788
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 26, 91, 414
Bst6I CTCTTC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 4 cut(s) 392, 396, 450, 502
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 1 cut(s) 788
BstF5I GGATG 2 cut(s) 145, 355
BstKTI GATC 2 cut(s) 55, 600
BstMBI GATC 2 cut(s) 52, 597
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 654
BsuTUI ATCGAT 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 788
BtgZI GCGATG 2 cut(s) 349, 519
BtrI CACGTC 1 cut(s) 761
BtsCI GGATG 2 cut(s) 145, 355
BtsIMutI CAGTG 2 cut(s) 31, 277
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 4 cut(s) 392, 396, 450, 502
Cfr13I GGNCC 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 654
Csp6I GTAC 2 cut(s) 220, 519
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CviAII CATG 3 cut(s) 74, 391, 789
CviJI RGCY 5 cut(s) 59, 398, 434, 452, 562
CviKI_1 RGCY 5 cut(s) 59, 398, 434, 452, 562
CviQI GTAC 2 cut(s) 220, 519
DdeI CTNAG 1 cut(s) 642
DpnI GATC 2 cut(s) 54, 599
DpnII GATC 2 cut(s) 52, 597
DraI TTTAAA 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 788
Eco24I GRGCYC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 788
EcoT38I GRGCYC 1 cut(s) 436
ErhI CCWWGG 1 cut(s) 788
FaeI CATG 3 cut(s) 77, 394, 792
FatI CATG 3 cut(s) 73, 390, 788
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 354, 388
FokI GGATG 2 cut(s) 152, 362
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 2 cut(s) 354, 388
FspBI CTAG 5 cut(s) 56, 395, 429, 449, 489
GluI GCNGC 2 cut(s) 354, 388
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 90
Hin1II CATG 3 cut(s) 77, 394, 792
HinfI GANTC 1 cut(s) 299
HphI GGTGA 3 cut(s) 386, 776, 784
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 237, 298
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 32, 155, 769
HpyCH4III ACNGT 3 cut(s) 26, 91, 414
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 6 cut(s) 130, 203, 500, 509, 544, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 3 cut(s) 77, 394, 792
Kzo9I GATC 2 cut(s) 52, 597
LpnPI CCDG 9 cut(s) 93, 116, 120, 265, 333, 438, 446, 544, 754
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 5 cut(s) 109, 340, 372, 496, 660
MaeI CTAG 5 cut(s) 56, 395, 429, 449, 489
MaeII ACGT 1 cut(s) 760
MaeIII GTNAC 5 cut(s) 20, 85, 177, 491, 764
MalI GATC 2 cut(s) 54, 599
MboI GATC 2 cut(s) 52, 597
MboII GAAGA 3 cut(s) 90, 93, 599
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 5 cut(s) 43, 197, 300, 393, 704
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 506
NcoI CCATGG 1 cut(s) 788
NdeII GATC 2 cut(s) 52, 597
NheI GCTAGC 2 cut(s) 394, 448
NlaIII CATG 3 cut(s) 77, 394, 792
NmuCI GTSAC 1 cut(s) 764
NspI RCATGY 1 cut(s) 394
PaeI GCATGC 1 cut(s) 394
PaqCI CACCTGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 2 cut(s) 355, 389
PsiI TTATAA 1 cut(s) 810
Psp124BI GAGCTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 452
PspGI CCWGG 1 cut(s) 106
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 2 cut(s) 221, 520
RsaNI GTAC 2 cut(s) 220, 519
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 436
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 2 cut(s) 354, 388
Sau3AI GATC 2 cut(s) 52, 597
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 436
SetI ASST 7 cut(s) 61, 189, 322, 436, 454, 550, 763
SfaNI GCATC 5 cut(s) 109, 340, 372, 496, 660
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 117
SphI GCATGC 1 cut(s) 394
SsiI CCGC 2 cut(s) 388, 686
SspI AATATT 1 cut(s) 568
SspMI CTAG 5 cut(s) 56, 395, 429, 449, 489
SstI GAGCTC 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 788
TaaI ACNGT 3 cut(s) 26, 91, 414
TaiI ACGT 1 cut(s) 763
TaqI TCGA 3 cut(s) 419, 440, 654
TatI WGTACW 2 cut(s) 219, 518
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 2 cut(s) 31, 284
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 2 cut(s) 31, 284
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 2 cut(s) 205, 422
XceI RCATGY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 409
XspI CTAG 5 cut(s) 56, 395, 429, 449, 489
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.