Prupe.6G023100_v2.0.a1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
1874278 .. 1875726
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G023100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 654 bp
ATGAGATCAACATCATGTCCATCTCAATCACAAACCAATCCTACTATTGCCATGGAGGAGAAGCAAGAAGAAGAAGAAGAAGATAGGATCAGCCAGTTGCCAGATGACATTCTTGATCACATCCTATGCTTCCTTCCTTCAAAGGCAGCCGCTAAAACAACCGTTTTGTCTTCAAGATGGAAGCATCTGTTTTGGTCTACAGTCACTAGGCTCAACATCAACATGCACAAAGAGTCCACCAAGCACAATGTGGAGCCAGCCATTCGATTATTTGAGGCTCTTTTCAAATGCAAGACACTTATTTCTGCTGATATTATCACCAACTTCTTCCATCTCCCAGAGATTATTTGTGTGCCCAAGTTGCAGTTTCTCCACTTAGAAGTCACAGAAAACATTGGCTCTCTAATGCAGGGTTTCCATAGGATTGTGGAGATGCAGCGCCGCGCTTGCCTGACATTCGAAGGCTTCATCCCCATTTTATCTGCAAACAATCACCTGGTATTGTGCAACACCAAAACACCAAGAGGGGAATATTTTTTGGAGATTGAAACCGTTGGGTCGCTTGGGGAGTTAGGATGTGCTGCTGAGAAGAAGAAAGAAGCTGCCTATGTATATGCTGATCGTAATTATAATATGGTGGCATATAGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

218

Amino Acids

24.72

Weight (kDa)

6.07

Isoelectric Point (pI)

59.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AccI GTMKAC 1 cut(s) 197
AccII CGCG 1 cut(s) 444
AciI CCGC 2 cut(s) 150, 442
AclWI GGATC 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 250
AgsI TTSAA 4 cut(s) 141, 174, 286, 548
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 1 cut(s) 602
AluI AGCT 1 cut(s) 602
AlwI GGATC 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 146, 436, 581, 602
AspLEI GCGC 2 cut(s) 441, 446
AsuHPI GGTGA 2 cut(s) 310, 485
AsuII TTCGAA 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 4 cut(s) 158, 448, 568, 589
BccI CCATC 3 cut(s) 28, 171, 339
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 442
BisI GCNGC 6 cut(s) 147, 150, 437, 442, 582, 603
BlsI GCNGC 6 cut(s) 148, 151, 438, 443, 583, 604
Bme1390I CCNGG 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 2 cut(s) 193, 423
BpiI GAAGAC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 10
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 120, 468, 581
BseJI GATNNNNATC 1 cut(s) 10
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 4 cut(s) 158, 448, 568, 589
Bsh1236I CGCG 1 cut(s) 444
Bsp119I TTCGAA 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 4 cut(s) 5, 87, 115, 619
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 2 cut(s) 150, 442
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 95
BspT104I TTCGAA 1 cut(s) 459
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 4 cut(s) 5, 87, 115, 619
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 3 cut(s) 163, 202, 553
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 258, 448
BstDEI CTNAG 2 cut(s) 376, 585
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 120, 468, 581
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 2 cut(s) 441, 446
BstKTI GATC 4 cut(s) 8, 90, 118, 622
BstMBI GATC 4 cut(s) 5, 87, 115, 619
BstMWI GCNNNNNNNGC 2 cut(s) 361, 447
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 4 cut(s) 158, 448, 568, 589
BstV2I GAAGAC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 3 cut(s) 120, 468, 581
Cac8I GCNNGC 2 cut(s) 258, 448
CfoI GCGC 2 cut(s) 441, 446
CsiI ACCWGGT 1 cut(s) 495
CviAII CATG 3 cut(s) 15, 52, 223
CviJI RGCY 9 cut(s) 93, 149, 211, 256, 260, 278, 399, 465, 602
CviKI_1 RGCY 9 cut(s) 93, 149, 211, 256, 260, 278, 399, 465, 602
DdeI CTNAG 2 cut(s) 376, 585
DpnI GATC 4 cut(s) 7, 89, 117, 621
DpnII GATC 4 cut(s) 5, 87, 115, 619
DraIII CACNNNGTG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 3 cut(s) 18, 55, 226
FatI CATG 3 cut(s) 14, 51, 222
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 6 cut(s) 147, 150, 437, 442, 582, 603
FokI GGATG 3 cut(s) 107, 455, 588
Fsp4HI GCNGC 6 cut(s) 147, 150, 437, 442, 582, 603
FspBI CTAG 1 cut(s) 207
GlaI GCGC 2 cut(s) 440, 445
GluI GCNGC 6 cut(s) 147, 150, 437, 442, 582, 603
HaeII RGCGCY 1 cut(s) 442
HhaI GCGC 2 cut(s) 441, 446
Hin1II CATG 3 cut(s) 18, 55, 226
Hin6I GCGC 2 cut(s) 439, 444
HinP1I GCGC 2 cut(s) 439, 444
HinfI GANTC 1 cut(s) 233
HphI GGTGA 2 cut(s) 310, 485
Hpy166II GTNNAC 2 cut(s) 198, 237
Hpy188III TCNNGA 2 cut(s) 113, 174
Hpy8I GTNNAC 2 cut(s) 198, 237
HpyAV CCTTC 3 cut(s) 143, 147, 455
HpyCH4III ACNGT 3 cut(s) 163, 202, 553
HpyCH4V TGCA 7 cut(s) 226, 291, 364, 409, 436, 485, 507
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 447
HpyF3I CTNAG 2 cut(s) 376, 585
Hsp92II CATG 3 cut(s) 18, 55, 226
HspAI GCGC 2 cut(s) 439, 444
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 4 cut(s) 5, 87, 115, 619
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 107, 114, 270, 351, 395, 464, 482, 509
Lsp1109I GCAGC 4 cut(s) 158, 448, 568, 589
LweI GCATC 2 cut(s) 193, 423
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 202, 382
MalI GATC 4 cut(s) 7, 89, 117, 621
MboI GATC 4 cut(s) 5, 87, 115, 619
MboII GAAGA 9 cut(s) 80, 83, 86, 89, 92, 162, 319, 601, 604
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 625
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 3 cut(s) 49, 268, 518
MslI CAYNNNNRTG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 497
MteI GCGCNGCGC 1 cut(s) 442
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 361, 447
NcoI CCATGG 1 cut(s) 51
NdeII GATC 4 cut(s) 5, 87, 115, 619
NlaIII CATG 3 cut(s) 18, 55, 226
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 2 cut(s) 202, 382
NspI RCATGY 1 cut(s) 226
NspV TTCGAA 1 cut(s) 459
PkrI GCNGC 6 cut(s) 148, 151, 438, 443, 583, 604
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PsiI TTATAA 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 221
SatI GCNGC 6 cut(s) 147, 150, 437, 442, 582, 603
Sau3AI GATC 4 cut(s) 5, 87, 115, 619
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 497
SduI GDGCHC 1 cut(s) 357
SetI ASST 2 cut(s) 498, 604
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 2 cut(s) 193, 423
SfcI CTRYAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 1 cut(s) 625
SsiI CCGC 2 cut(s) 150, 442
SspI AATATT 1 cut(s) 533
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 3 cut(s) 163, 202, 553
TaqI TCGA 2 cut(s) 265, 459
TasI AATT 1 cut(s) 625
TauI GCSGC 2 cut(s) 152, 444
TseFI GTSAC 2 cut(s) 202, 382
TseI GCWGC 4 cut(s) 146, 436, 581, 602
Tsp45I GTSAC 2 cut(s) 202, 382
TspDTI ATGAA 1 cut(s) 457
XceI RCATGY 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 197
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.