Prupe.6G027800_v2.0.a1

KIX domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0029033
Physical Location & Seq
Reverse (-)
2167493 .. 2168487
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G027800.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 303 bp
ATGGAGAACAATAATGGGAGGCCTCCTCAAGTTGCAGATCCATCAATTGATGCAGGAGGGGATTGGAGGAGTCAACTGCCGCCAGGTGGACGGCAAAGAATTCCCAACCAGATAATGGATACACTTCAAAAACTTCTTCCCCCCGATCAAGTGGGACAGGAACTCATGAAAATTGCTGTAAGGTTTGAGGAAAAGTATTGTACTTCCATGAACTCTTCTTGGGGTTCTATTTTTCCTGCTACATTTAATACTTCTTTTTTGGTAAATATCATGAGGTGTCCGGGCGGCTTGCGCGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

101

Amino Acids

11.09

Weight (kDa)

7.79

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029033)

Species Orthologous Gene IDs
prunus_persica Prupe.6G027800_v2.0.a1 Prupe.6G027800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AccII CGCG 1 cut(s) 294
AciI CCGC 2 cut(s) 80, 285
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 86, 115
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 82
AlwI GGATC 1 cut(s) 32
AoxI GGCC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 99
AspLEI GCGC 2 cut(s) 294, 296
AsuC2I CCSGG 1 cut(s) 282
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 84
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 282
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 2 cut(s) 80, 286
BlsI GCNGC 2 cut(s) 81, 287
Bme1390I CCNGG 2 cut(s) 84, 282
BmrFI CCNGG 2 cut(s) 84, 282
BmsI GCATC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 115
BseBI CCWGG 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 86, 115
BsePI GCGCGC 1 cut(s) 292
BseRI GAGGAG 2 cut(s) 15, 82
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 86, 115
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 37, 145
BspACI CCGC 2 cut(s) 80, 285
BspANI GGCC 1 cut(s) 22
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 2 cut(s) 165, 270
BspPI GGATC 1 cut(s) 32
BssHII GCGCGC 1 cut(s) 292
BssMI GATC 2 cut(s) 37, 145
Bst2UI CCWGG 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 290, 294
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 2 cut(s) 294, 296
BstKTI GATC 2 cut(s) 40, 148
BstMBI GATC 2 cut(s) 37, 145
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 2 cut(s) 82, 280
BstUI CGCG 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 290, 294
CciI TCATGA 2 cut(s) 165, 270
CfoI GCGC 2 cut(s) 294, 296
Csp6I GTAC 1 cut(s) 201
CviAII CATG 3 cut(s) 166, 208, 271
CviJI RGCY 2 cut(s) 22, 288
CviKI_1 RGCY 2 cut(s) 22, 288
CviQI GTAC 1 cut(s) 201
DpnI GATC 2 cut(s) 39, 147
DpnII GATC 2 cut(s) 37, 145
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 3 cut(s) 169, 211, 274
FaiI YATR 3 cut(s) 167, 209, 272
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 165, 207, 270
Fnu4HI GCNGC 2 cut(s) 80, 286
Fsp4HI GCNGC 2 cut(s) 80, 286
GlaI GCGC 2 cut(s) 293, 295
GluI GCNGC 2 cut(s) 80, 286
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 281
HhaI GCGC 2 cut(s) 294, 296
Hin1II CATG 3 cut(s) 169, 211, 274
Hin6I GCGC 2 cut(s) 292, 294
HinP1I GCGC 2 cut(s) 292, 294
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 74, 89
Hpy188III TCNNGA 2 cut(s) 166, 271
Hpy8I GTNNAC 2 cut(s) 74, 89
HpyCH4V TGCA 2 cut(s) 35, 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
Hsp92II CATG 3 cut(s) 169, 211, 274
HspAI GCGC 2 cut(s) 292, 294
Kzo9I GATC 2 cut(s) 37, 145
LpnPI CCDG 7 cut(s) 39, 69, 96, 122, 143, 249, 294
LweI GCATC 1 cut(s) 40
MalI GATC 2 cut(s) 39, 147
MboI GATC 2 cut(s) 37, 145
MboII GAAGA 2 cut(s) 128, 207
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 37
MluCI AATT 3 cut(s) 45, 99, 171
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 7 cut(s) 12, 33, 36, 50, 60, 181, 267
MseI TTAA 1 cut(s) 246
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 84, 282
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 282
NdeII GATC 2 cut(s) 37, 145
NlaIII CATG 3 cut(s) 169, 211, 274
PagI TCATGA 2 cut(s) 165, 270
PauI GCGCGC 1 cut(s) 292
PceI AGGCCT 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 2 cut(s) 81, 287
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 37
PteI GCGCGC 1 cut(s) 292
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 80, 286
Sau3AI GATC 2 cut(s) 37, 145
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 84, 282
SetI ASST 4 cut(s) 88, 185, 278, 301
SfaNI GCATC 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 3 cut(s) 45, 99, 171
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 2 cut(s) 80, 285
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 82, 280
TasI AATT 3 cut(s) 45, 99, 171
TatI WGTACW 1 cut(s) 200
TauI GCSGC 2 cut(s) 82, 288
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TspDTI ATGAA 2 cut(s) 182, 224
Van91I CCANNNNNTGG 1 cut(s) 115
XapI RAATTY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.