Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0020860

Physical Location & Seq

Genomic Coordinates Forward (+)

2222085 .. 2226043

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G028500.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTGCAGTGCATAGAGGGGTTAAAGCATTTATGTGCTTCCCTACTGAGGTGCTGTGATCTTGAGTTGTACAAGCAATCAAGAGGCTTAGAAGACCCTGAAATTCTAGCAAGGGAGACAGTGTTCAGCGTGAGTGAAATAGAGGCACTATATGAGCTATTTAAGAAGATTAGCAGTGCAGTGATTGATGATGGATTGATTAACAAGGAGGAGTTTCAACTGGCATTATTCAAGACAAACAAGAAAGAGAGCTTGTTTGCTGATCGTGTATTTGACTTGTTTGACACAAAGCACAATGGAATACTAGGTTTTGAAGAGTTTGCACGAGCCCTCTCTGTCTTTCATCCTAACGCCCCAATTGACGATAAGATTGAGTTTTCTTTTCAATTATATGACCTCAAGCAACAAGGCTTCATTGAAAGGCAGGAGGTGAAGCAAATGGTAGTCGCTACCCTTGCAGAATCTGGCATGAATCTTTCAGATGATGTGATAGAAAGTATAATTGATAAGACCTTTGAGGAAGCCGATACTAAACATGATGGGAGGATCGACAAGGAAGAGTGGAGAAGCCTTGTTTTGCGGCACCCATCCCTTCTTAAAAATATGACGCTGCAATACCTCAAAGACATCACCACAACATTTCCGAGCTTTGTATTTCACTCACAAGTGGACGACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

227

Amino Acids

26.05

Weight (kDa)

4.82

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020860)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G028500_v2.0.a1 Prupe.6G028500_v2.0.a1 Prupe.6G028500_v2.0.a1 Prupe.6G028500_v2.0.a1 Prupe.6G028500_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	582
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	5 cut(s)	218, 232, 314, 386, 419
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	3 cut(s)	157, 252, 648
AluI	AGCT	3 cut(s)	157, 252, 648
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	610
ApoI	RAATTY	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	442, 622
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	3 cut(s)	185, 533, 595
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	107, 305
BisI	GCNGC	2 cut(s)	581, 611
BlsI	GCNGC	2 cut(s)	582, 612
BmiI	GGNNCC	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	83, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	343, 587
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	58, 262, 546
BspACI	CCGC	1 cut(s)	580
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	58, 262, 546
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	309, 552
BstAUI	TGTACA	1 cut(s)	69
BstDEI	CTNAG	2 cut(s)	47, 88
BstF5I	GGATG	2 cut(s)	343, 587
BstKTI	GATC	3 cut(s)	61, 265, 549
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	3 cut(s)	58, 262, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	597
BstV2I	GAAGAC	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	343, 587
BtsI	GCAGTG	3 cut(s)	14, 181, 186
BtsIMutI	CAGTG	4 cut(s)	14, 126, 181, 186
CaiI	CAGNNNCTG	1 cut(s)	464
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	469, 536
CviJI	RGCY	8 cut(s)	87, 157, 252, 329, 411, 524, 570, 648
CviKI_1	RGCY	8 cut(s)	87, 157, 252, 329, 411, 524, 570, 648
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	47, 88
DpnI	GATC	3 cut(s)	60, 264, 548
DpnII	GATC	3 cut(s)	58, 262, 546
Eam1104I	CTCTTC	2 cut(s)	309, 552
EarI	CTCTTC	2 cut(s)	309, 552
Eco24I	GRGCYC	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	331
FaeI	CATG	2 cut(s)	472, 539
FatI	CATG	2 cut(s)	468, 535
Fnu4HI	GCNGC	2 cut(s)	581, 611
FokI	GGATG	2 cut(s)	330, 574
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	2 cut(s)	581, 611
FspBI	CTAG	2 cut(s)	107, 305
GluI	GCNGC	2 cut(s)	581, 611
HgaI	GACGC	1 cut(s)	616
Hin1II	CATG	2 cut(s)	472, 539
HinfI	GANTC	2 cut(s)	461, 472
HphI	GGTGA	2 cut(s)	442, 622
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	2 cut(s)	481, 645
Hpy188III	TCNNGA	3 cut(s)	62, 81, 232
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	6 cut(s)	7, 12, 179, 323, 458, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	47, 88
Hsp92II	CATG	2 cut(s)	472, 539
Kzo9I	GATC	3 cut(s)	58, 262, 546
LpnPI	CCDG	4 cut(s)	111, 206, 410, 450
Lsp1109I	GCAGC	1 cut(s)	597
MaeI	CTAG	2 cut(s)	107, 305
MalI	GATC	3 cut(s)	60, 264, 548
MboI	GATC	3 cut(s)	58, 262, 546
MboII	GAAGA	4 cut(s)	104, 178, 326, 569
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	102, 357, 386, 501
MseI	TTAA	4 cut(s)	23, 162, 201, 597
MslI	CAYNNNNRTG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	3 cut(s)	58, 262, 546
NlaIII	CATG	2 cut(s)	472, 539
NlaIV	GGNNCC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	461, 472
PkrI	GCNGC	2 cut(s)	582, 612
PspN4I	GGNNCC	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	23, 162, 201, 597
SatI	GCNGC	2 cut(s)	581, 611
Sau3AI	GATC	3 cut(s)	58, 262, 546
SduI	GDGCHC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	62, 398
SmoI	CTYRAG	2 cut(s)	62, 398
Sse9I	AATT	4 cut(s)	102, 357, 386, 501
SsiI	CCGC	1 cut(s)	580
SspMI	CTAG	2 cut(s)	107, 305
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	549
TasI	AATT	4 cut(s)	102, 357, 386, 501
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	461, 472
Tru1I	TTAA	4 cut(s)	23, 162, 201, 597
Tru9I	TTAA	4 cut(s)	23, 162, 201, 597
TscAI	CASTG	4 cut(s)	14, 126, 181, 186
TseI	GCWGC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	332, 403, 485
TspRI	CASTG	4 cut(s)	14, 126, 181, 186
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	2 cut(s)	107, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.