Prupe.6G030500_v2.0.a1

transposition, RNA-mediated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
2385787 .. 2386728
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G030500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 426 bp
ATGTGTTCATACATAGAAAGATTCATAGACTGGATTTGTTTTTGGGAAAAGGACATTTCATGTACACTCCCCACCACGAAGCAAAAGATAGTCTTCAAGGTGCAAATAAATTCTGAGAAATACAAAACCAAGGCCTTGAAGACTGCTGCAAAGGCCCGAGGTGTGAGCAACGTTTCCGTGGAAGTAGAGAAAGAGCTAATGGAGGTGACTGGAGTTGGAGTTGATTCCGTTTGCTTGGCCAAGTCATTGCAGAAGAAGCTTGGCTACGCCACCATAGTAAGCGTTGAAGAAGCGGAGAAAGAGGACAATAAGAAAGAGGACAAGAAGAAAGAGGAGATAAAGGCAATTCAATGGGCATCAACCTATTTTCCCCGTCCAATGTTTCCTGTGTACTATGACTCTGACGGAAACCCGATATTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.13

Weight (kDa)

8.25

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 293
AclI AACGTT 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 2 cut(s) 64, 392
AgsI TTSAA 4 cut(s) 97, 139, 287, 350
AluBI AGCT 2 cut(s) 196, 259
AluI AGCT 2 cut(s) 196, 259
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 3 cut(s) 132, 153, 237
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 156
BalI TGGCCA 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BbsI GAAGAC 2 cut(s) 85, 146
BbvI GCAGC 1 cut(s) 133
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 85, 146
BpmI CTGGAG 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 129, 157, 177
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bse1I ACTGG 2 cut(s) 35, 214
Bse3DI GCAATG 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 129, 157, 177
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 35, 214
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 3 cut(s) 134, 155, 239
BsiHKCI CYCGRG 1 cut(s) 156
BsnI GGCC 3 cut(s) 134, 155, 239
BsoBI CYCGRG 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 62
BspACI CCGC 1 cut(s) 293
BspANI GGCC 3 cut(s) 134, 155, 239
BspCNI CTCAG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 2 cut(s) 35, 214
BssECI CCNNGG 3 cut(s) 129, 157, 177
BssT1I CCWWGG 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 177
BstMWI GCNNNNNNNGC 2 cut(s) 152, 256
BstV1I GCAGC 1 cut(s) 133
BstV2I GAAGAC 2 cut(s) 85, 146
BsuRI GGCC 3 cut(s) 134, 155, 239
BtgI CCRYGG 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 63, 391
CviAII CATG 1 cut(s) 60
CviJI RGCY 6 cut(s) 134, 155, 196, 239, 259, 264
CviKI_1 RGCY 6 cut(s) 134, 155, 196, 239, 259, 264
CviQI GTAC 2 cut(s) 63, 391
DdeI CTNAG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 63
FaiI YATR 6 cut(s) 10, 14, 26, 61, 275, 396
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 3 cut(s) 134, 155, 239
Hin1II CATG 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 3 cut(s) 21, 224, 398
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 2 cut(s) 65, 391
Hpy188I TCNGA 2 cut(s) 115, 403
Hpy8I GTNNAC 2 cut(s) 65, 391
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 103, 149, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 256
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 63
LpnPI CCDG 3 cut(s) 16, 195, 399
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 365
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 5 cut(s) 85, 151, 265, 299, 337
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 2 cut(s) 109, 345
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 5 cut(s) 152, 196, 295, 310, 325
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 152, 256
NlaIII CATG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 134
PfeI GAWTC 2 cut(s) 21, 224
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Psp1406I AACGTT 1 cut(s) 171
PspPI GGNCC 1 cut(s) 154
RsaI GTAC 2 cut(s) 64, 392
RsaNI GTAC 2 cut(s) 63, 391
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 392
SetI ASST 7 cut(s) 102, 163, 174, 198, 207, 261, 365
SfaNI GCATC 1 cut(s) 365
Sse9I AATT 2 cut(s) 109, 345
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 1 cut(s) 293
StuI AGGCCT 1 cut(s) 134
StyI CCWWGG 1 cut(s) 129
TaiI ACGT 1 cut(s) 174
TasI AATT 2 cut(s) 109, 345
TatI WGTACW 2 cut(s) 62, 390
TfiI GAWTC 2 cut(s) 21, 224
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 13, 48
TspGWI ACGGA 3 cut(s) 166, 217, 420
XapI RAATTY 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.