Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2610787 .. 2611626

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G034300.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAATGAATCGAATTTTTTGCTTGAAACAGACAACTTTTTTGATGCATATGCTAAGGCTCGAGAGCAGTTATCATTTGGTATGCGAAAAGGAAACCTCTCTCTGCTGCCTCCCTCAGCCCTTCCTCATCTCTCATACACAAACCCGGGACACAAAGAGGAAACCACCACTCCAAAACGCAGAGGTAGAACGAATGCATGTGAAGCGGCGAAACACTTTGATCCAGCTGCCGGTGTACCTCAAAAATTCACCAAACCTTATGTCCGGTCGAAGAAAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGGAACAATGAGGGCTTTAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

110

Amino Acids

12.39

Weight (kDa)

10.17

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	2 cut(s)	13, 245
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	60, 145
ApeKI	GCWGC	2 cut(s)	106, 227
ApoI	RAATTY	2 cut(s)	13, 245
ArsI	GACNNNNNNTTYG	4 cut(s)	23, 55, 246, 278
AsuC2I	CCSGG	2 cut(s)	146, 147
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	2 cut(s)	60, 145
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	93, 214
BcgI	CGANNNNNNTGC	1 cut(s)	35
BcnI	CCSGG	2 cut(s)	146, 147
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	3 cut(s)	107, 207, 228
BlsI	GCNGC	3 cut(s)	108, 208, 229
Bme1390I	CCNGG	2 cut(s)	146, 147
BmeT110I	CYCGRG	2 cut(s)	60, 145
BmrFI	CCNGG	2 cut(s)	146, 147
BmsI	GCATC	1 cut(s)	34
Bpu10I	CCTNAGC	2 cut(s)	54, 115
BpuMI	CCSGG	2 cut(s)	146, 147
BsaJI	CCNNGG	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	93, 214
Bsh1285I	CGRYCG	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	269
BsiHKCI	CYCGRG	2 cut(s)	60, 145
BsiSI	CCGG	3 cut(s)	146, 231, 265
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	199
BsoBI	CYCGRG	2 cut(s)	60, 145
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	54, 115
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	144, 145
BstV1I	GCAGC	2 cut(s)	93, 214
Cfr10I	RCCGGY	1 cut(s)	230
Cfr9I	CCCGGG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	5 cut(s)	59, 119, 227, 293, 318
CviKI_1	RGCY	5 cut(s)	59, 119, 227, 293, 318
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	54, 115
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco88I	CYCGRG	2 cut(s)	60, 145
EcoT22I	ATGCAT	2 cut(s)	49, 199
FaeI	CATG	1 cut(s)	201
FaiI	YATR	6 cut(s)	49, 51, 83, 136, 199, 261
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	1 cut(s)	197
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	107, 207, 228
Fsp4HI	GCNGC	3 cut(s)	107, 207, 228
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	107, 207, 228
HapII	CCGG	3 cut(s)	146, 231, 265
Hin1II	CATG	1 cut(s)	201
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	3 cut(s)	146, 231, 265
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	131, 283
HpyCH4V	TGCA	2 cut(s)	47, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	54, 115
Hsp92II	CATG	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	4 cut(s)	159, 237, 244, 278
Lsp1109I	GCAGC	2 cut(s)	93, 214
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	294
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	283
MluCI	AATT	2 cut(s)	13, 245
Mph1103I	ATGCAT	2 cut(s)	49, 199
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	3 cut(s)	146, 231, 265
MspR9I	CCNGG	2 cut(s)	146, 147
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	146, 147
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	201
NsiI	ATGCAT	2 cut(s)	49, 199
NspI	RCATGY	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	60
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	108, 208, 229
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SatI	GCNGC	3 cut(s)	107, 207, 228
Sau3AI	GATC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	146, 147
SetI	ASST	6 cut(s)	99, 187, 229, 241, 259, 328
SfaNI	GCATC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	60
SmaI	CCCGGG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	2 cut(s)	13, 245
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	144, 145
TaqI	TCGA	3 cut(s)	11, 61, 269
TasI	AATT	2 cut(s)	13, 245
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	106, 227
TspDTI	ATGAA	2 cut(s)	17, 21
TspMI	CCCGGG	1 cut(s)	145
XapI	RAATTY	2 cut(s)	13, 245
XceI	RCATGY	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	60
XmaI	CCCGGG	1 cut(s)	145
XspI	CTAG	1 cut(s)	294
Zsp2I	ATGCAT	2 cut(s)	49, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.