Prupe.6G034800_v2.0.a1

Protein RFT1 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
2628475 .. 2629211
737 bp
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UTR
Exon/CDS
Intron
Prupe.6G034800.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 219 bp
ATGAAGTTGATCCTTCAAGAAGGACAAAGTCTTGTCCTTTTATGGTGGGGGACATATTATAACCAAGCTGTATGTGGACTTGTGGACAAATTAGGGAGCCTAGTGGTGAGGCTGGTGTTTCTTCCTTTTGAAGAAAGTTCCTATGCTACATTTGCTAGGTCTGCATCGGGTTTGCTTTCCTCCTTTGTTTACTTGATGGTTCTTTTGATGTTATCTTGA

Protein Analysis

73

Amino Acids

8.07

Weight (kDa)

6.01

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AclWI GGATC 1 cut(s) 4
AgsI TTSAA 2 cut(s) 17, 131
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AlwI GGATC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 118
BccI CCATC 1 cut(s) 190
BfaI CTAG 2 cut(s) 101, 156
BmiI GGNNCC 1 cut(s) 98
BmsI GCATC 1 cut(s) 173
BslFI GGGAC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 98
BspPI GGATC 1 cut(s) 4
BssMI GATC 1 cut(s) 9
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 152, 161
CviJI RGCY 3 cut(s) 68, 99, 112
CviKI_1 RGCY 3 cut(s) 68, 99, 112
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
FaiI YATR 5 cut(s) 43, 55, 60, 73, 144
FaqI GGGAC 1 cut(s) 64
FspBI CTAG 2 cut(s) 101, 156
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 77, 85, 190
Hpy188III TCNNGA 2 cut(s) 17, 216
Hpy8I GTNNAC 3 cut(s) 77, 85, 190
HpyAV CCTTC 2 cut(s) 14, 23
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 161
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 1 cut(s) 98
LweI GCATC 1 cut(s) 173
MaeI CTAG 2 cut(s) 101, 156
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 2 cut(s) 113, 143
MluCI AATT 1 cut(s) 89
MnlI CCTC 2 cut(s) 102, 190
MwoI GCNNNNNNNGC 2 cut(s) 152, 161
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 27
PsiI TTATAA 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 9
SetI ASST 2 cut(s) 70, 161
SfaNI GCATC 1 cut(s) 173
SgeI CNNG 9 cut(s) 29, 44, 77, 92, 113, 125, 168, 180, 205
Sse9I AATT 1 cut(s) 89
SspMI CTAG 2 cut(s) 101, 156
TasI AATT 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 27
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 2 cut(s) 101, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.