Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2630828 .. 2631488

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G034900.1_v2.0.a1.CDS.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGTCAAGAGCTTCGTCGGTTGGATCTCAATCTCAATCACTCAGAGACAGCAGTTTCGTCAGGCAACTTTCAGTTGAGGACTTTGCGCTCTATGGAGTACAATTTCTTCTTTTTGTCACCTGTGTACTGTTTCTCAGTCGTGAGGGAGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0016020 GO:0016043 GO:0031984 GO:0033036 GO:0034203 GO:0034204 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046836 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0097035 GO:0098827 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rft-1

Protein Analysis

52

Amino Acids

5.73

Weight (kDa)

5.97

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	31
AfaI	GTAC	2 cut(s)	99, 126
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	31
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BcoDI	GTCTC	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	55, 148
BsmAI	GTCTC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	54, 147
BspPI	GGATC	1 cut(s)	31
BssMI	GATC	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	41, 134
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
CfoI	GCGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	98, 125
CviJI	RGCY	1 cut(s)	11
CviKI_1	RGCY	1 cut(s)	11
CviQI	GTAC	2 cut(s)	98, 125
DdeI	CTNAG	2 cut(s)	41, 134
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
FaiI	YATR	1 cut(s)	93
FspEI	CC	9 cut(s)	2, 6, 46, 62, 78, 128, 129, 133, 136
GlaI	GCGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	2 cut(s)	6, 140
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	41, 134
HspAI	GCGC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	23
LpnPI	CCDG	2 cut(s)	46, 133
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	1 cut(s)	98
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	2 cut(s)	70, 136
NdeII	GATC	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	2 cut(s)	99, 126
RsaNI	GTAC	2 cut(s)	98, 125
Sau3AI	GATC	1 cut(s)	23
SetI	ASST	2 cut(s)	13, 122
SgeI	CNNG	4 cut(s)	18, 73, 132, 152
Sse9I	AATT	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	129
TasI	AATT	1 cut(s)	101
TatI	WGTACW	2 cut(s)	97, 124
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.