Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2632846 .. 2635652

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G035000.1_v2.0.a1.CDS.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGGAAACGACAGTACCCTTTAAGAATCTCACTAGCAGAGAGTACCCGGATCATAAGAAGAAGGTGCATTCTTTGGCTTGGAACTACATGGGCACGAAGCTCACATCATGCTCTGTAGATCAAACCGCTAGGGTTTGGCACATTGAGCCCCACGGACATGGTAAGGTTAAAGTTATTGAATTGAAGTGGCATACTGATAGTGTGGATCAGCAACACGCCTATAGACCTGATAGGACGCACATTGCCGTTGGTAATAGGGATGATGAACTAACAATTCTGGATGTTCGGAAATTCAGGTCCATTCACAAGCGAAAGTTCAATTATGAGGTTAATGAAATTGCTCGGAGCACAAGAAGTGAAATTTTCTTCTTGACTACTGGAATGATGAGAACAATACTAGCATACCCATCTCTTCGACCAGTTGACACTCTCATGGCTCATACAGCTGGGTGTTATTGCATTGCGATTGACCCACTTGGAAGGTATTTTGCTGTTGGAAGTGCCGATTCCTTGGTCACCCTGTGGGGTATCTCAGAGATGCTCTGTGTGAGAACATTTACAAAACTTGAATTGCCTGTGAGGACAATAAGCTTCAACAACACTGGAGAGTATCTTGCTTCTGCCAGCGAAGACTTATTTATTGAAATATCCAATATTCAAACTGGGAGGACAGTGCATCAAATCCCATGTAGGGCTGCCATGAAGAGTGTTGAGTGGAATCCTAAATCCAATATCCTTGAAAGTAAAGGGCGGCCATTTTATGATACTTTGATCCATACACATTTCACTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

266

Amino Acids

30.47

Weight (kDa)

8.91

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	129, 754
AclWI	GGATC	3 cut(s)	60, 216, 769
AcoI	YGGCCR	1 cut(s)	755
AcsI	RAATTY	2 cut(s)	293, 363
AdeI	CACNNNGTG	2 cut(s)	525, 795
AfaI	GTAC	2 cut(s)	18, 47
AfiI	CCNNNNNNNGG	1 cut(s)	694
AgsI	TTSAA	8 cut(s)	182, 187, 322, 572, 598, 647, 662, 743
AluBI	AGCT	3 cut(s)	103, 449, 594
AluI	AGCT	3 cut(s)	103, 449, 594
Alw21I	GWGCWC	1 cut(s)	353
AlwI	GGATC	3 cut(s)	60, 216, 769
AoxI	GGCC	1 cut(s)	755
ApeKI	GCWGC	1 cut(s)	698
ApoI	RAATTY	2 cut(s)	293, 363
AspS9I	GGNCC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	98
BaeI	ACNNNNGTAYC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	4 cut(s)	36, 132, 401, 792
BfmI	CTRYAG	2 cut(s)	117, 223
BisI	GCNGC	2 cut(s)	699, 755
BlsI	GCNGC	2 cut(s)	700, 756
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	531, 688
BmuI	ACTGGG	1 cut(s)	675
BpiI	GAAGAC	1 cut(s)	639
BpmI	CTGGAG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	154, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	4 cut(s)	385, 422, 610, 670
Bse3DI	GCAATG	2 cut(s)	243, 462
BseDI	CCNNGG	2 cut(s)	154, 513
BseGI	GGATG	2 cut(s)	268, 289
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMI	GCAATG	2 cut(s)	243, 462
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	4 cut(s)	385, 422, 610, 670
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	685
BseYI	CCCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	757
Bsp1286I	GDGCHC	3 cut(s)	98, 153, 353
Bsp143I	GATC	4 cut(s)	52, 121, 208, 774
BspACI	CCGC	2 cut(s)	129, 754
BspANI	GGCC	1 cut(s)	757
BspCNI	CTCAG	1 cut(s)	548
BspPI	GGATC	3 cut(s)	60, 216, 769
BsrDI	GCAATG	2 cut(s)	243, 462
BsrI	ACTGG	4 cut(s)	385, 422, 610, 670
BssECI	CCNNGG	2 cut(s)	154, 513
BssMI	GATC	4 cut(s)	52, 121, 208, 774
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	16, 676
Bst6I	CTCTTC	2 cut(s)	420, 701
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	1 cut(s)	535
BstDSI	CCRYGG	1 cut(s)	154
BstEII	GGTNACC	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	268, 289
BstKTI	GATC	4 cut(s)	55, 124, 211, 777
BstMBI	GATC	4 cut(s)	52, 121, 208, 774
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 446
BstPI	GGTNACC	1 cut(s)	517
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	2 cut(s)	117, 223
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	1 cut(s)	639
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	268, 289
BtsIMutI	CAGTG	2 cut(s)	603, 681
Cac8I	GCNNGC	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	300
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	17, 46
CviAII	CATG	6 cut(s)	91, 111, 161, 436, 690, 703
CviJI	RGCY	8 cut(s)	80, 103, 151, 440, 449, 594, 698, 757
CviKI_1	RGCY	8 cut(s)	80, 103, 151, 440, 449, 594, 698, 757
CviQI	GTAC	2 cut(s)	17, 46
DdeI	CTNAG	1 cut(s)	535
DpnI	GATC	4 cut(s)	54, 123, 210, 776
DpnII	GATC	4 cut(s)	52, 121, 208, 774
DraIII	CACNNNGTG	2 cut(s)	525, 795
EaeI	YGGCCR	1 cut(s)	755
Eam1104I	CTCTTC	2 cut(s)	420, 701
EarI	CTCTTC	2 cut(s)	420, 701
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	300
Eco91I	GGTNACC	1 cut(s)	517
EcoO65I	GGTNACC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	6 cut(s)	94, 114, 164, 439, 693, 706
FatI	CATG	6 cut(s)	90, 110, 160, 435, 689, 702
Fnu4HI	GCNGC	2 cut(s)	699, 755
FokI	GGATG	2 cut(s)	275, 296
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	699, 755
FspBI	CTAG	4 cut(s)	36, 132, 401, 792
GluI	GCNGC	2 cut(s)	699, 755
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	757
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	6 cut(s)	94, 114, 164, 439, 693, 706
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	592
HinfI	GANTC	3 cut(s)	28, 509, 721
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	291, 348, 538
Hpy188III	TCNNGA	2 cut(s)	281, 373
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	58, 477
HpyCH4III	ACNGT	2 cut(s)	16, 676
HpyCH4V	TGCA	3 cut(s)	70, 462, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 446
HpyF3I	CTNAG	1 cut(s)	535
Hsp92II	CATG	6 cut(s)	94, 114, 164, 439, 693, 706
Kzo9I	GATC	4 cut(s)	52, 121, 208, 774
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	531, 688
MaeI	CTAG	4 cut(s)	36, 132, 401, 792
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	54, 123, 210, 776
MboI	GATC	4 cut(s)	52, 121, 208, 774
MboII	GAAGA	5 cut(s)	73, 361, 407, 644, 718
MhlI	GDGCHC	3 cut(s)	98, 153, 353
MluCI	AATT	7 cut(s)	182, 276, 293, 322, 339, 363, 572
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	3 cut(s)	322, 576, 663
MseI	TTAA	3 cut(s)	24, 171, 333
MslI	CAYNNNNRTG	2 cut(s)	159, 434
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	148, 446
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	4 cut(s)	52, 121, 208, 774
NlaIII	CATG	6 cut(s)	94, 114, 164, 439, 693, 706
NmuCI	GTSAC	1 cut(s)	517
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	28, 509, 721
PkrI	GCNGC	2 cut(s)	700, 756
PspEI	GGTNACC	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	18, 47
RsaNI	GTAC	2 cut(s)	17, 46
RseI	CAYNNNNRTG	2 cut(s)	159, 434
SaqAI	TTAA	3 cut(s)	24, 171, 333
SatI	GCNGC	2 cut(s)	699, 755
Sau3AI	GATC	4 cut(s)	52, 121, 208, 774
Sau96I	GGNCC	1 cut(s)	300
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	3 cut(s)	98, 153, 353
SfaNI	GCATC	2 cut(s)	531, 688
SfcI	CTRYAG	2 cut(s)	117, 223
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	159, 434
Sse9I	AATT	7 cut(s)	182, 276, 293, 322, 339, 363, 572
SsiI	CCGC	2 cut(s)	129, 754
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	4 cut(s)	36, 132, 401, 792
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	16, 676
TaqI	TCGA	1 cut(s)	418
TasI	AATT	7 cut(s)	182, 276, 293, 322, 339, 363, 572
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	3 cut(s)	28, 509, 721
Tru1I	TTAA	3 cut(s)	24, 171, 333
Tru9I	TTAA	3 cut(s)	24, 171, 333
TscAI	CASTG	2 cut(s)	610, 681
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	3 cut(s)	282, 351, 719
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	610, 681
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	2 cut(s)	293, 363
XspI	CTAG	4 cut(s)	36, 132, 401, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.