Prupe.6G036000_v2.0.a1

FH protein interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Reverse (-)
2716419 .. 2717363
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G036000.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 945 bp
ATGAAGGAGCTGAAGAAATCTTCTGTAATTCGCCTCAATGTGGGAGGAAACAAATTTTGCACAAGTGTTGATACTCTAACTCAGCGTGAGCCTAACTCAATGCTTGCTGCAATGTTTAGTGGACGCCATAATATTGCGTGTGAAGAAGACTGTGAAAAGGGGTGTGTTTTTATTGACAGGGATGGCACACATTTTCGGCACATCCTTAATTGGTTAAGGGATGCTACTGTTCCTTTGTTAGAAGAGCGTTGTAAATATTCAGAGCTTTTGAGAGAGGCAGAATATTTTCAACTAGTTGGTCTAACAGAGGAAATACATGCTTTTCTAAACAAGGAGGACGACGATCAAATTGCAAAGTTGGATGCAGATTTTACGCGCAGGGATATCATCAACTTTATACTATCTAATGCTACAATGAAGTTTAGAGGTTTCAATCTCTCTGGCCTTGATCTTTCGAAACTAGACTTGACGAAGATAGATTTCAGTTATGCATGCCTGAGAAATGTTTGTTTCTCAGGTTGTGATCTTACACGCGTAAAATTTAATTATGTGGATGCCGAGGGTGCCATCTTTAACAATGCTAGTTTGACAAGTACTGAATTTGTAGGAGCAAATCTCCGTGACGCTTCGTTTGTTGATGCCAAGCTTCGCTTTGCAAAGATAAAAAGTGCATGCTTGGTAAATTGTAGCTTTTTGAGAGCAATCTTGTATAATGCACACCTTTATGACGCTGATCTTACAAATGCAAATTTTGAAGCGGCTAGTCTGGAATGTGCAGCCTTGAAAAATCTCAAGGCCACGAATACTGCAAATTTTAGGGATGCATATCTTATAAGTTCTGGCGTAGAAGATGTGAATTTGCAACATTTGGTGGGTGCAAAGCTTGGCGTTGTTACAGCCTGCGGTAATGGGTTTATATGTAAGAAACCAGACGAAATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB_2 Pentapeptide

Protein Analysis

315

Amino Acids

35.1

Weight (kDa)

5.93

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 833
AccB1I GGYRCC 1 cut(s) 563
AccII CGCG 2 cut(s) 376, 534
AciI CCGC 2 cut(s) 758, 903
AcsI RAATTY 7 cut(s) 53, 539, 599, 748, 811, 856, 936
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 4 cut(s) 290, 433, 755, 784
AhlI ACTAGT 1 cut(s) 292
AluBI AGCT 5 cut(s) 10, 265, 646, 690, 883
AluI AGCT 5 cut(s) 10, 265, 646, 690, 883
AoxI GGCC 2 cut(s) 442, 795
ApeKI GCWGC 2 cut(s) 107, 776
ApoI RAATTY 7 cut(s) 53, 539, 599, 748, 811, 856, 936
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 378
AsuII TTCGAA 1 cut(s) 455
BanI GGYRCC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 94, 788
BccI CCATC 2 cut(s) 176, 575
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 4 cut(s) 293, 461, 582, 762
BisI GCNGC 3 cut(s) 108, 759, 777
BlsI GCNGC 3 cut(s) 109, 760, 778
BmcAI AGTACT 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 565
BmsI GCATC 5 cut(s) 211, 352, 544, 628, 811
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 600, 632
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 776
BsaBI GATNNNNATC 1 cut(s) 825
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 558
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 825
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 6 cut(s) 187, 201, 226, 367, 559, 826
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 95, 488, 528
BseXI GCAGC 2 cut(s) 94, 788
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 2 cut(s) 376, 534
BshFI GGCC 2 cut(s) 444, 797
BshNI GGYRCC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 40
BsnI GGCC 2 cut(s) 444, 797
Bsp119I TTCGAA 1 cut(s) 455
Bsp143I GATC 4 cut(s) 343, 448, 523, 733
BspACI CCGC 2 cut(s) 758, 903
BspANI GGCC 2 cut(s) 444, 797
BspCNI CTCAG 3 cut(s) 94, 489, 527
BspFNI CGCG 2 cut(s) 376, 534
BspLI GGNNCC 1 cut(s) 565
BspQI GCTCTTC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 4 cut(s) 343, 448, 523, 733
BssNI GRCGYC 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 152, 229
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 4 cut(s) 105, 493, 673, 901
BstDEI CTNAG 3 cut(s) 81, 497, 514
BstF5I GGATG 6 cut(s) 187, 201, 226, 367, 559, 826
BstFNI CGCG 2 cut(s) 376, 534
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 4 cut(s) 346, 451, 526, 736
BstMBI GATC 4 cut(s) 343, 448, 523, 733
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNSI RCATGY 3 cut(s) 320, 495, 675
BstUI CGCG 2 cut(s) 376, 534
BstV1I GCAGC 2 cut(s) 94, 788
BstV2I GAAGAC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 444, 797
BtsCI GGATG 6 cut(s) 187, 201, 226, 367, 559, 826
Cac8I GCNNGC 4 cut(s) 105, 493, 673, 901
CfoI GCGC 1 cut(s) 378
CseI GACGC 3 cut(s) 132, 632, 737
Csp6I GTAC 1 cut(s) 594
CviAII CATG 3 cut(s) 317, 492, 672
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 3 cut(s) 81, 497, 514
DpnI GATC 4 cut(s) 345, 450, 525, 735
DpnII GATC 4 cut(s) 343, 448, 523, 733
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 32
EcoRV GATATC 1 cut(s) 385
EcoT22I ATGCAT 2 cut(s) 493, 826
FaeI CATG 3 cut(s) 320, 495, 675
FalI AAGNNNNNCTT 2 cut(s) 635, 667
FatI CATG 3 cut(s) 316, 491, 671
Fnu4HI GCNGC 3 cut(s) 108, 759, 777
FokI GGATG 6 cut(s) 188, 194, 233, 374, 566, 833
Fsp4HI GCNGC 3 cut(s) 108, 759, 777
FspBI CTAG 4 cut(s) 293, 461, 582, 762
GlaI GCGC 1 cut(s) 377
GluI GCNGC 3 cut(s) 108, 759, 777
HaeIII GGCC 2 cut(s) 444, 797
HgaI GACGC 3 cut(s) 132, 632, 737
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 3 cut(s) 320, 495, 675
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 2 cut(s) 644, 881
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 767
Hpy8I GTNNAC 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 344
HpyCH4III ACNGT 2 cut(s) 152, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpyF3I CTNAG 3 cut(s) 81, 497, 514
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 3 cut(s) 320, 495, 675
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 4 cut(s) 343, 448, 523, 733
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 7, 608
LpnPI CCDG 8 cut(s) 163, 364, 426, 501, 509, 752, 825, 913
Lsp1109I GCAGC 2 cut(s) 94, 788
LweI GCATC 5 cut(s) 211, 352, 544, 628, 811
MaeI CTAG 4 cut(s) 293, 461, 582, 762
MaeIII GTNAC 2 cut(s) 620, 892
MalI GATC 4 cut(s) 345, 450, 525, 735
MboI GATC 4 cut(s) 343, 448, 523, 733
MboII GAAGA 7 cut(s) 12, 25, 155, 158, 254, 484, 860
MluI ACGCGT 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 7 cut(s) 38, 44, 268, 301, 328, 419, 553
Mph1103I ATGCAT 2 cut(s) 493, 826
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 4 cut(s) 207, 215, 543, 573
MslI CAYNNNNRTG 1 cut(s) 723
MvnI CGCG 2 cut(s) 376, 534
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeII GATC 4 cut(s) 343, 448, 523, 733
NlaIII CATG 3 cut(s) 320, 495, 675
NlaIV GGNNCC 1 cut(s) 565
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 1 cut(s) 620
NsiI ATGCAT 2 cut(s) 493, 826
NspI RCATGY 3 cut(s) 320, 495, 675
NspV TTCGAA 1 cut(s) 455
PaeI GCATGC 2 cut(s) 495, 675
PciSI GCTCTTC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 285
PkrI GCNGC 3 cut(s) 109, 760, 778
PsiI TTATAA 1 cut(s) 833
PspN4I GGNNCC 1 cut(s) 565
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 1 cut(s) 723
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 4 cut(s) 207, 215, 543, 573
SatI GCNGC 3 cut(s) 108, 759, 777
Sau3AI GATC 4 cut(s) 343, 448, 523, 733
ScaI AGTACT 1 cut(s) 595
SetI ASST 8 cut(s) 12, 267, 430, 520, 648, 692, 723, 885
SfaNI GCATC 5 cut(s) 211, 352, 544, 628, 811
SfuI TTCGAA 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
SpeI ACTAGT 1 cut(s) 292
SphI GCATGC 2 cut(s) 495, 675
SsiI CCGC 2 cut(s) 758, 903
SspI AATATT 3 cut(s) 133, 257, 284
SspMI CTAG 4 cut(s) 293, 461, 582, 762
TaaI ACNGT 2 cut(s) 152, 229
TaqI TCGA 1 cut(s) 455
TatI WGTACW 1 cut(s) 593
TauI GCSGC 1 cut(s) 761
Tru1I TTAA 4 cut(s) 207, 215, 543, 573
Tru9I TTAA 4 cut(s) 207, 215, 543, 573
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 2 cut(s) 107, 776
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 2 cut(s) 17, 431
TspGWI ACGGA 1 cut(s) 608
XapI RAATTY 7 cut(s) 53, 539, 599, 748, 811, 856, 936
XceI RCATGY 3 cut(s) 320, 495, 675
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 4 cut(s) 293, 461, 582, 762
ZrmI AGTACT 1 cut(s) 595
Zsp2I ATGCAT 2 cut(s) 493, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.