Prupe.6G037700_v2.0.a1

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
N/A
Physical Location & Seq
Forward (+)
2841701 .. 2843283
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G037700.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 552 bp
ATGACATCTCTAATGTCTGCCCTGCCTTCCGTTGCCTTTTCTTCTTCATCTGGGTTAAGATTAAGAGCGTCCAAAGTGGCTGTGCTACGCTCTTTTACTGGCCTTGCTCCTCCTAAACCCCTTCTCCGCACTATTGCTTCACCAGAATTTAGCAGCTTTGAGCATTGTTTTACTACTATTGACAATGGCGGTCGAGTTTTTGCCATGAGACATGGGAGGCGAGTCCCCAAACTCCCCCTGACCAACGCCGGGCACTGCTGCGAGGCCTCACAACTCAGCTTCTTAGACACGGTCGTATCAAAACTAACTAGAGCCAGGGCAAGCGCAATGTGGAAGTACATTGATAAGATGATCACATTGGCAACGGATGGAACTCTTCATAAAAGGAGGGAAGCTCTCGGATTTATCTACGAGAAGCAGATTGTGCATGCCTTGTTTGCAGAGGTTCCAGACAGATATGGGGAGAGGAATGGAGGGTATACAAGAATTGTTAGAACTCTGCCAACAAGGCAAGGGGATAATGCGCCTATGGCCTACATTGAGCTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L17

Protein Analysis

184

Amino Acids

20.26

Weight (kDa)

10.07

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 479
AciI CCGC 2 cut(s) 127, 189
AcsI RAATTY 1 cut(s) 146
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 249
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 4 cut(s) 156, 279, 395, 544
AluI AGCT 4 cut(s) 156, 279, 395, 544
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 3 cut(s) 100, 264, 531
ApeKI GCWGC 2 cut(s) 153, 258
ApoI RAATTY 1 cut(s) 146
AspLEI GCGC 2 cut(s) 326, 526
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 255
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BbvI GCAGC 2 cut(s) 165, 245
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 2 cut(s) 309, 550
BglI GCCNNNNNGGC 1 cut(s) 508
BisI GCNGC 2 cut(s) 154, 259
BlsI GCNGC 2 cut(s) 155, 260
Bme1390I CCNGG 2 cut(s) 250, 316
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 2 cut(s) 250, 316
BplI GAGNNNNNCTC 2 cut(s) 379, 411
BpuMI CCSGG 1 cut(s) 250
BsaJI CCNNGG 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 2 cut(s) 165, 245
Bsh1285I CGRYCG 2 cut(s) 193, 294
BshFI GGCC 3 cut(s) 102, 266, 533
BsiEI CGRYCG 2 cut(s) 193, 294
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 3 cut(s) 102, 266, 533
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 2 cut(s) 127, 189
BspANI GGCC 3 cut(s) 102, 266, 533
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 1 cut(s) 351
BssNAI GTATAC 1 cut(s) 480
Bst1107I GTATAC 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 322, 429
BstDEI CTNAG 2 cut(s) 275, 283
BstF5I GGATG 1 cut(s) 373
BstHHI GCGC 2 cut(s) 326, 526
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 1 cut(s) 351
BstMCI CGRYCG 2 cut(s) 193, 294
BstMWI GCNNNNNNNGC 4 cut(s) 424, 437, 508, 530
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 248, 314
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 165, 245
BstZ17I GTATAC 1 cut(s) 480
BsuRI GGCC 3 cut(s) 102, 266, 533
BtsCI GGATG 1 cut(s) 373
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 322, 429
CfoI GCGC 2 cut(s) 326, 526
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 337
CviAII CATG 3 cut(s) 205, 212, 428
CviJI RGCY 9 cut(s) 80, 102, 156, 266, 279, 314, 395, 533, 544
CviKI_1 RGCY 9 cut(s) 80, 102, 156, 266, 279, 314, 395, 533, 544
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 2 cut(s) 275, 283
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco147I AGGCCT 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 314
FaeI CATG 3 cut(s) 208, 215, 431
FaiI YATR 7 cut(s) 206, 213, 381, 429, 459, 480, 530
FaqI GGGAC 1 cut(s) 209
FatI CATG 3 cut(s) 204, 211, 427
FbaI TGATCA 1 cut(s) 351
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 2 cut(s) 154, 259
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 154, 259
FspBI CTAG 2 cut(s) 309, 550
GlaI GCGC 2 cut(s) 325, 525
GluI GCNGC 2 cut(s) 154, 259
HaeIII GGCC 3 cut(s) 102, 266, 533
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 326, 526
Hin1II CATG 3 cut(s) 208, 215, 431
Hin6I GCGC 2 cut(s) 324, 524
HinP1I GCGC 2 cut(s) 324, 524
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 1 cut(s) 401
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 1 cut(s) 480
HpyAV CCTTC 2 cut(s) 36, 131
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 427, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 437, 508, 530
HpyF3I CTNAG 2 cut(s) 275, 283
Hsp92II CATG 3 cut(s) 208, 215, 431
HspAI GCGC 2 cut(s) 324, 524
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 9 cut(s) 35, 36, 84, 156, 251, 262, 301, 328, 462
Lsp1109I GCAGC 2 cut(s) 165, 245
MaeI CTAG 2 cut(s) 309, 550
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 3 cut(s) 33, 36, 368
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 146, 486
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 8 cut(s) 120, 210, 256, 277, 381, 436, 459, 467
MseI TTAA 2 cut(s) 56, 62
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 250, 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 4 cut(s) 424, 437, 508, 530
NciI CCSGG 1 cut(s) 250
NdeII GATC 1 cut(s) 351
NlaIII CATG 3 cut(s) 208, 215, 431
NlaIV GGNNCC 1 cut(s) 447
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PceI AGGCCT 1 cut(s) 266
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 155, 260
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 447
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 56, 62
SatI GCNGC 2 cut(s) 154, 259
Sau3AI GATC 1 cut(s) 351
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 2 cut(s) 250, 316
SduI GDGCHC 1 cut(s) 255
SetI ASST 5 cut(s) 158, 281, 397, 447, 546
SphI GCATGC 1 cut(s) 431
Sse9I AATT 2 cut(s) 146, 486
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 2 cut(s) 127, 189
SspMI CTAG 2 cut(s) 309, 550
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 248, 314
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 146, 486
TatI WGTACW 1 cut(s) 336
Tru1I TTAA 2 cut(s) 56, 62
Tru9I TTAA 2 cut(s) 56, 62
TscAI CASTG 1 cut(s) 260
TseI GCWGC 2 cut(s) 153, 258
TspDTI ATGAA 2 cut(s) 36, 368
TspGWI ACGGA 2 cut(s) 19, 380
TspRI CASTG 1 cut(s) 260
Tth111I GACNNNGTC 1 cut(s) 290
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 479
XspI CTAG 2 cut(s) 309, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.